ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACTGAATGTTACCTGGTCTTGCCACTGGAAGCCTTGTTAGTGACAA
GGGATGGCCAGTTGAGGTTCTGTATCCCTCATAATTAAGGAGACCTCATT
AGGGTCACTTTTATATATTTTAGGAAGTTTCCACAGCACTAGGCCTCCAT
ATCATTCTTTAAGTGCACTTCAATTCCATATGTCTCTCCCTGAACTCTGT
ATCCCCTTCCCTCCTGTCCTGATCCTTCTGTTCTTGTCCCCACCTGACCC
CAGTCTACTCATAAAGTCTATTCTATTTCTGCCTCCCAGGGTGATCCTCT
ATCCTGAATCTCTCTGGGTCTACAGATTACAGATTGGTTATTATTTTCTT
AATGGCTAATGTCCACATATAACCAAATAACAAACCATATTTATCTTTCT
GGGTCTGGTTTACCTCATTCAGGATGAATTTTTTTCTAGTTTTATCCATT
TTCCTGCAAATTTCATTTTTTCAAGCAGCCAAGTAATACTCCACTGTGTA
AATGTACCACCTTAAAAAAGTCCATTCTTCCATTGAGGGACATCTAGGCT
GCTTCCAGTTTCTGGCTATCATGAAGAAGAGTATCCAGCAATGAACATGG
GTGAGGAAGCATCCTTGTGGTGGGCTAGAGTGTCCTTTGTGTGCACACCC
ATGAGTAGTATAGCTGGATCTTAATTCTGAGGAAGCTCCATATTAATTTC
CGN

GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAACAAAGCCATTTTTCTTTCACCTTTG
CAGGTCCGATGTCTGAGATGAGAAAATGGCCGTGTCGCTTGCGACCGATG
TGTGTTGTGTCTGGTTCCTGCGGTTTCTTCTCCTGCTTTGAACACGAAAC
CCTTCATAGCTCTGAGATGGAAAGCAGAGCAGGCTTTTGTCAGCGAGGCC
ATTCGTCACGTTCCCGAGAGGGGACGGTGGACTCCCGCAGCCTTGGGCTC
TGCCAGCACACAGACCACCCATGTCGTGGAGCTGGGAAAGCCACCAGGCA
GGCAATGCATAACAGGGCCAACTGGGCACTAAGCTCTCAGCTCTCAGTCC
TTCCAGCCCTGGGGACTCAGGTCTGAAGACTGCCAGAGAGACTTGATCTC
ACCTAGTGGCTGAGGTCTCTGGTAGGGTAAATCTTGAAGAAGAATTGGGT
GGTGACTAAATTTGTTTAATAGTTCAGCATGAATGGAGCTTCTTAGATCT
GCCCCAGAGCAGAGCTCAATGAGGAAATGACTTTACTGCTCTGGTAAAAA
TTGTTTGGCTACGTTTAAGTTCAATTCTTTTCTTTCTTCTTTTTTTTTCT
GTTCTGCAGAAAGCTAGCTGTAAAAACAAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGCTCTCTTA

Query= MSMg01no493_l05.g1 MSMg01no493_l05.g1 CHROMAT_FILE:
MSMg01no493_l05.g1 PHD_FILE: MSMg01no493_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:20 2005
         (674 letters)



>mm_chr4_83621590_83622669
          Length = 1080

 Score = 1234 bits (638), Expect = 0.0
 Identities = 655/664 (98%), Gaps = 6/664 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacaaagccatttttctttcacctttgcaggtccgatgtctgagatgagaaaatggccg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 812 taacaaagccatttttctttcacctttgcaggtccaatgtctgagatgagaaaatggccg 753

                                                                       
Query: 61  tgtcgcttgcgaccgatgtgtgttgtgtctggttcctgcggtttcttctcctgctttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tgtcgcttgcgaccgatgtgtgttgtgtctggttcctgcggtttcttctcctgctttgaa 693

                                                                       
Query: 121 cacgaaacccttcatagctctgagatggaaagcagagcaggcttttgtcagcgaggccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cacgaaacccttcatagctctgagatggaaagcagagcaggcttttgtcagcgaggccat 633

                                                                       
Query: 181 tcgtcacgttcccgagaggggacggtggactcccgcagccttgggctctgccagcacaca 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 632 tcgtcacgttcccgagaggggactgtggactcccgcagccttgggctctgccagcacaca 573

                                                                       
Query: 241 gaccacccatgtcgtggagctgggaaagccaccaggcaggcaatgcataacagggccaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaccacccatgtcgtggagctgggaaagccaccaggcaggcaatgcataacagggccaac 513

                                                                       
Query: 301 tgggcactaagctctcagctctcagtccttccagccctggggactcaggtctgaagactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgggcactaagctctcagctctcagtccttccagccctggggactcaggtctgaagactg 453

                                                                       
Query: 361 ccagagagacttgatctcacctagtggctgaggtctctggtagggtaaatcttgaagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccagagagacttgatctcacctagtggctgaggtctctggtagggtaaatcttgaagaag 393

                                                                       
Query: 421 aattgggtggtgactaaatttgtttaatagttcagcatgaatggagcttcttagatctgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aattgggtggtgactaaatttgtttaatagttcagcatgaatggagcttcttagatctgc 333

                                                                       
Query: 481 cccagagcagagctcaatgaggaaatgactttactgctctggtaaaaattgtttggctac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cccagagcagagctcaatgaggaaatgactttactgctctggtaaaaattgtttggctac 273

                                                                       
Query: 541 gtttaagttcaattcttttctttcttctt------tttttttctgttctgcagaaagcta 594
           |||||||||||||||||||||||||||||      |||||||||||||||||||||||||
Sbjct: 272 gtttaagttcaattcttttctttcttcttcttttttttttttctgttctgcagaaagcta 213

                                                                       
Query: 595 gctgtaaaaacaagagagagagagagagagagagagagagagagagagagagagagagag 654
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 212 gctgtaaaaacaagagagagagagagagagagggagagagagagagagagagagagagag 153

               
Query: 655 agag 658
           ||||
Sbjct: 152 agag 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 24
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1080
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1070
Effective search space:   710480
Effective search space used:   710480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)