Query= MSMg01no494_c21.b1 MSMg01no494_c21.b1 CHROMAT_FILE:
MSMg01no494_c21.b1 PHD_FILE: MSMg01no494_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:58 2005
(670 letters)
>mm_chr7_12501537_12502603
Length = 1067
Score = 1110 bits (574), Expect = 0.0
Identities = 645/670 (96%), Gaps = 11/670 (1%)
Strand = Plus / Plus
Query: 4 gaattcatgaagccttacggtacagttattctcctggactactgtgaagatggcataact 63
|||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 204 gaattcatgaagccagatggtacggttattctcctggactactgtgaagatggcataaat 263
Query: 64 ctattcatga-tttttttaaggatggcttagagatggaaaacattaacaaattggatcta 122
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 ctattcatgattttttttaaggatggcttagagatggaaaacgttaacaaattggatcta 323
Query: 123 tcacctatcaccataattggctgctgcttaccatccatacaacaccaggacttaggacaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcacctatcaccataattggctgctgcttaccatccatacaacaccaggacttaggacaa 383
Query: 183 atgggactgacgtcatcttgaacttttattttgactatgatttatttggagtggaggcat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgggactgacgtcatcttgaacttttattttgactatgatttatttggagtggaggcat 443
Query: 243 tggtgtttttgcttttaaggaaaaaacatgttatgtgggttgtctaaaaat-aaagtgca 301
||||||||||| |||||||| ||||||| ||||||||||||| ||||| ||||||||
Sbjct: 444 tggtgtttttgtttttaagg-aaaaaca---aatgtgggttgtct-aaaataaaagtgca 498
Query: 302 tttaaattcaaaaattttt-aaatgtatcaggagagtagaaaactgtaacagaagaatga 360
||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 499 tttaaattc-aaaatttttcaaatgtatcaggagtgtagaaaactgtaacagaagaatga 557
Query: 361 aaattaaatgtatttgaaaatgtcataatgaaatctaatatgtgtatgttaattaaagat 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 558 aaattaaatgtatttgaaaatgtcttaatgaaatctaatatgtgtatgttaattaaagat 617
Query: 421 ttaaaaaattcaagccaattaaaaaaaaacacacatggttttatggtacattttgttata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttaaaaaattcaagccaattaaaaaaaaacacacatggttttatggtacattttgttata 677
Query: 481 atcaaagacccaaatataagatgccaaatcacaaggagaacacaagtgaagatgattgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 atcaaagacccaaatataagatgccaaatcacaaggagaacacaagtgaagatgattgaa 737
Query: 541 tttttctcagaagggtcataagtaaggatgcaggggagagagaagagagatcagctggag 600
||||||||||||||||| || |||||||||||||||||||||||||||||| | | ||||
Sbjct: 738 tttttctcagaagggtc-ta-gtaaggatgcaggggagagagaagagagataaacaggag 795
Query: 601 ggcggggcaacctctaggccggcagattactagcagtgggagatttggatccttaagtga 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ggcggggcaatctctaggccggcagattactagcagtgggagatttggatccttaagtga 855
Query: 661 ccacttccta 670
||||||||||
Sbjct: 856 ccacttccta 865
Score = 122 bits (63), Expect = 9e-32
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 477 tataatcaaagacccaaatataagatgccaaatcacaaggagaacacaagtgaagatgat 536
|||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct: 5 tataatcaaagacccaaagacaagatgccaaataacaaggagaacacaagtgaagatgat 64
Query: 537 tgaatttttctcagaaggg 555
||||| |||||||||||||
Sbjct: 65 tgaatctttctcagaaggg 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 670
Length of database: 1067
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1057
Effective search space: 697620
Effective search space used: 697620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_c21.g1 MSMg01no494_c21.g1 CHROMAT_FILE:
MSMg01no494_c21.g1 PHD_FILE: MSMg01no494_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:58 2005
(359 letters)
>mm_chr4_3073301_3074059
Length = 759
Score = 559 bits (289), Expect = e-163
Identities = 340/357 (95%), Gaps = 2/357 (0%)
Strand = Plus / Plus
Query: 4 tgtctgtgcataaaacaatttatacacattgggtaaagaatcacgtaagtcctttactgt 63
|||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 tgtctgtgcaaaaaacaatgtatacacattggggaaagaatcacgtaagtcctttactgt 263
Query: 64 gaactatcatgaaggagtctgctgggaattttgctttaaatgaatcctagtgcacacagg 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaactatcatgaagcagtctgctgggaattttgctttaaatgaatcctagtgcacacagg 323
Query: 124 aatgaattccaatatagtaagtttcataaggcatcattctatatttgggattgccttcct 183
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 324 aatgaattccaatatagcaagtttcataaggcatcattctatattagggattgccttctt 383
Query: 184 caatataattgcagaagatttgaaacaaattatagctgtcacaatacatccagtatcagc 243
|||||||||| ||||||||||||||| |||||||||| ||||||| ||| ||||||||||
Sbjct: 384 caatataattacagaagatttgaaactaattatagctatcacaatgcattcagtatcagc 443
Query: 244 agattgctctctttgatctgtttttgttaactcttttttttttttttttttttttttttg 303
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 agattgctctcttagatctgtttttgttaacttttttttttttttttttttttttttttg 503
Query: 304 cctttt-gagacagggtttctctgtatagccctggctgtcctggaactcactttgta 359
| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 c-ttttcgagacagggtttctctgtgtagccctggctgtcctggaactcactttgta 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space: 262500
Effective search space used: 262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
