XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTATG
TGCCCAGGTTGGCCTTTAATGCCCATTGTCCTCCTGCCTCTCCCTTCCAA
GTGTTGAGAGTTCAAGCCTGTGCCACCAGACGTAGGCACACATGGGAATT
TGACCATATCTTGTGGTCACTCACTATCACATCTTTGGCGTCATGCTTAA
CAATTAAATACTAAATTCAAGGTCTTAGGGGCACAGGCAAATCCAGGTTC
AATGTGCTGAGAGGAAAATGAAATATAGAGGACTGAGTTTCAAAACTAAT
TGTGGGCAATGGAGAGCCAGAATTAGTCTTAGGTTTTGATCTGAAACTGA
CCATGTAGGTGAATTTGAACTAAAGAGCTTCAAATTATTTAACTCTGTAA
TTATCACACAGGCAGAAATACATGTATTCTTTATCAGAGAATTCTTTCTT
GATTTTTTTTATGAGTTCTCGTTGGCCCCATTAAGTTCTTGTACCATATC
CTGCTTATATTCTCTTTAAATCTCTTGTCTTTGCCTTGTAGAAGGATATT
ATTACAGAATAAGAAAAGAAGATGAAGTTTGGAACTTAAAAATGTATTGT
CATTTTCTTCTTTCTCTTTGAATGTTGGCTTTTGACAAAGGAAGAAAAAT
TAATAATACCCAGCCAGTAGACACTTATAAACATAAATCACAGAAGTTTT
GTTTATTCACTTCTTTCATTCATAGAACAAAT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCTTTTATTTTTTCTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTCCTTCTCTCTCTCTCTCTCTGTCTCTGTCTCTGTCTCTG
TCTCTGTCTCTGTCTCTGTCTGTCTCTCTCTCTCTCTCTCTCTTTCTTTT
TTTCTATGTCCCAATCACAGCCCCCTTTCTCCTCCTGGTCTCCCTTGAGA
GAGCCCATTACCCTCTCTTCCCTCCCCTTCTCCTATGAGAAGGGGGAGAC
GCCCTGTGGACATCACTCAACCCTGAAATATCAAGTCACTGCAAGACTAG
GCACATCCTCTCCCACTGAGGGCAAACAAGGCAGGTAGCTAGGGTAAAGG
GATCCACAGGCAGGCAACAGATTCTAAGACAGCCCTAAGTACAATTTTTG
GAGGAATGCTGTGGATTTGTAATAATCCAGTATTTTAAAACTGACAATTC
ATTTAGAAATTCCTTGTTTCAGCACTTTTCATTGATGAGGGG

Query= MSMg01no494_g03.b1 MSMg01no494_g03.b1 CHROMAT_FILE:
MSMg01no494_g03.b1 PHD_FILE: MSMg01no494_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:12 2005
         (695 letters)



>mm_chr4_5254577_5255673
          Length = 1097

 Score = 1294 bits (669), Expect = 0.0
 Identities = 688/695 (98%), Gaps = 3/695 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtatgt-gcccaggttggcctttaatgcccattgtcctcctgcctctccctt 62
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 ggaattctgtatgtagaccaggttggcctttaatgcccattgtcctcctgcctctccctt 930

                                                                       
Query: 63  ccaagtgttgagagttcaagcctgtgccaccagacgtaggcacacatgggaatttgacca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 ccaagtgttgagagttcaagcctgtgccaccagacgtaggcacacatgggaatttgacca 870

                                                                       
Query: 123 tatcttgtggtcactcactatcacatctttggcgtcatgcttaacaattaaatactaaat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tatcttgtggtcactcactatcacatctttggcgtcatgcttaacaattaaatactaaat 810

                                                                       
Query: 183 tcaaggtcttaggggcacaggcaaatccaggttcaatgtgctgagaggaaaatgaaatat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tcaaggtcttaggggcacaggcaaatccaggttcaatgtgctgagaggaaaatgaaatat 750

                                                                       
Query: 243 agaggactgagtttcaaaactaattgtgggcaatggagagccagaattagtcttaggttt 302
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 agaggactgagttttaaaactaattgtgggcaatggagagccagaattagtcttaggttt 690

                                                                       
Query: 303 tgatctgaaactgaccatgtaggtgaatttgaactaaagagcttcaaattatttaactct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tgatctgaaactgaccatgtaggtgaatttgaactaaagagcttcaaattatttaactct 630

                                                                       
Query: 363 gtaattatcacacaggcagaaatacatgtattctttatcagagaattctttcttgatttt 422
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 629 gtaattatcacacaggcagaaatacatgtattctttatcagagaattccttcttgatttt 570

                                                                       
Query: 423 tttt--atgagttctcgttggccccattaagttcttgtaccatatcctgcttatattctc 480
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttttcatgagttctcgttggccccattaagttcttgtaccatatcctgcttatattctc 510

                                                                       
Query: 481 tttaaatctcttgtctttgccttgtagaaggatattattacagaataagaaaagaagatg 540
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tttaaatctcttgtctttgtcttgtagaaggatattattacagaataagaaaagaagatg 450

                                                                       
Query: 541 aagtttggaacttaaaaatgtattgtcattttcttctttctctttgaatgttggcttttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aagtttggaacttaaaaatgtattgtcattttcttctttctctttgaatgttggcttttg 390

                                                                       
Query: 601 acaaaggaagaaaaattaataatacccagccagtagacacttataaacataaatcacaga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acaaaggaagaaaaattaataatacccagccagtagacacttataaacataaatcacaga 330

                                              
Query: 661 agttttgtttattcacttctttcattcatagaaca 695
           |||||||||||||||||||||||||||||||||||
Sbjct: 329 agttttgtttattcacttctttcattcatagaaca 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1097
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1087
Effective search space:   744595
Effective search space used:   744595
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)