Query= MSMg01no494_i19.b1 MSMg01no494_i19.b1 CHROMAT_FILE:
MSMg01no494_i19.b1 PHD_FILE: MSMg01no494_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:25 2005
(616 letters)
>mm_chr4_45289120_45290135
Length = 1016
Score = 563 bits (291), Expect = e-164
Identities = 314/323 (97%), Gaps = 6/323 (1%)
Strand = Plus / Plus
Query: 5 gaattccaaatttcacatagtcgaggaaactatctgcaactggaaagccgtgcctctgct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaatttcacatagtcgaggaaactatctgcaactggaaagccgtgcctctgct 264
Query: 65 agagaacgaggcaagtcagccactgctgacagtccgaagcagccctcatccttatatttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagaacgaggcaagtcagccactgctgacagtccgaagcagccctcatccttatatttc 324
Query: 125 caaaaatccaaaatgttactgcctatgtccctccacatccttcaggtaaaactctagatg 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaaatccaaaatgttactgcccatgtccctccacatccttcaggtaaaactctagatg 384
Query: 185 acaacctgtcctgttgtcagtgccgtggatgtgtttcctacagaggctggccctgagagc 244
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 acaacctatcctgttgtcagtgccgtggatgtgtttcctacagaggctggtcctgagagc 444
Query: 245 aatgctttcaggctgtgtgtcatagagactggtcctgagagcaatgctttcaggctgtgt 304
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgctttcaggctgtgt--catagagactggtcctgagagcaatgctttcaggctgtgt 502
Query: 305 --cataga-gactggtcctgaga 324
||| || ||||||||||||||
Sbjct: 503 gtcat-gaagactggtcctgaga 524
Score = 97.4 bits (50), Expect = 3e-24
Identities = 66/72 (91%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 468 agagactggtcctgagagcaatgctttcaggctgtgtgtcatggagactggtcctgagac 527
|||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 426 agaggctggtcctgagagcaatgctttcaggctgtgt--catagagactggtcctgagag 483
Query: 528 cagtgctttcag 539
|| |||||||||
Sbjct: 484 caatgctttcag 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 2
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_i19.g1 MSMg01no494_i19.g1 CHROMAT_FILE:
MSMg01no494_i19.g1 PHD_FILE: MSMg01no494_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:25 2005
(488 letters)
>mm_chr4_45465328_45466215
Length = 888
Score = 913 bits (472), Expect = 0.0
Identities = 484/488 (99%)
Strand = Plus / Minus
Query: 1 agtgagtggctttgcccttcggctcggcaggtcagagatctccatggggatggagactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agtgagtggctttgcccttcggctcggcaggtcagagatctccatggggatggagactgt 629
Query: 61 aagccgcatgaggtcaaagctctgcctgccctgtgcacagatggggccttacccagcttc 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 628 aagccgcatgaggtcaaagctccgcctgccctgtgcacagatggggccttacccagcttc 569
Query: 121 aagcctggtgcccagtgagtgctgggaagtttgtagttactgagtcaggcctggccacac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aagcctggtgcccagtgagtgctgggaagtttgtagttactgagtcaggcctggccacac 509
Query: 181 aagtcccacccacgctctcttccaggctaggctctgccagtggccatgtggcagcaggta 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 508 aagtcccacccacgctctcttccaggctaggctctgccagtggccgtgtggcagcaggta 449
Query: 241 cttggtgctcacatctgtcctcttgtgtgttggacatctttctcctggccacatgaggcc 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 448 cttggtgctcacatctgtcctcttgtgtgttggacatctgtctcctggccacatgaggcc 389
Query: 301 aaaggagtcctcagtgggaggttactttcgtgtggccagtggccagacctcctcccttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaaggagtcctcagtgggaggttactttcgtgtggccagtggccagacctcctcccttcc 329
Query: 361 tgcctatgtctgaattccctctaagaaactgaaagtgtatccttcctgtctgtggaggaa 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 328 tgcctatgtctgaattccctctaagaaactgaaagtgtgtccttcctgtctgtggaggaa 269
Query: 421 gccactgccctgagccttgtgagagctgtgtttgtggccagcactggcttgtctctccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gccactgccctgagccttgtgagagctgtgtttgtggccagcactggcttgtctctccct 209
Query: 481 tcctcatt 488
||||||||
Sbjct: 208 tcctcatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
