Query= MSMg01no494_l02.b1 MSMg01no494_l02.b1 CHROMAT_FILE:
MSMg01no494_l02.b1 PHD_FILE: MSMg01no494_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:35 2005
(683 letters)
>mm_chr4_37749886_37750968
Length = 1083
Score = 1166 bits (603), Expect = 0.0
Identities = 648/667 (97%), Gaps = 8/667 (1%)
Strand = Plus / Plus
Query: 5 gaattctttgtttagctctgagccccattttttaatggggttatttgattttctgaaatc 64
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 213 gaattctttgttcagttctgagcccca-tttttaatggggttatttgattttctgaagtc 271
Query: 65 caccttcttgagttctttatatatattggatattagtcccctatccgatttaggataggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 272 caccttcttgagttctttatatatattggatattagtcccctatccgatttgggataggt 331
Query: 125 aaagatcctttcccaatctgttggtggcctttttgtcttattgacagtgtcttttgcttt 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 332 aaagatcctttcccaatctgttggtggcctttttgtcttattgacggtgtcttttgcttt 391
Query: 185 gcagaagctttgcaattttatgaggtcccatttattgattcttgatcttacagcacaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gcagaagctttgcaattttatgaggtcccatttattgattcttgatcttacagcacaaaa 451
Query: 245 gaagcatttaacttaggaactagcttctcccactaatgtcaaaagctatactgtgtgagc 304
||||||||||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct: 452 gaagcatttaact-------tagcttctcccactaatgttaaaagctacactgtgtgagc 504
Query: 305 ttacccaaactagagacagttgttctctaaatgtgataacctagacaatttgattattct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttacccaaactagagacagttgttctctaaatgtgataacctagacaatttgattattct 564
Query: 365 ctccagtattgtttgtctcctataaattaaaatcatcactattattcttggtagggaatg 424
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 565 ctccagtattgtttgtctcctataaattaaaataatcactattattcttggtaaggaatg 624
Query: 425 catattggaaaaatctcccagactctttatcccagttcacttcatgttgcccctgtgatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catattggaaaaatctcccagactctttatcccagttcacttcatgttgcccctgtgatg 684
Query: 485 cttgcaggttctttcacaatttgaactccatccttgtgaactattgtgatctaagtattt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cttgcaggttctttcacaatttgaactccatccttgtgaactattgtgatctaagtattt 744
Query: 545 cctttcccttcatttacttaaactttactactgtgtcactttatacagttctttataaca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cctttcccttcatttacttaaactttactactgtgtcactttatacagttctttataaca 804
Query: 605 attttctaattaaaaaaaatctcagcacgaaattatacacactatgtattagatttgagc 664
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 805 attttctaatttaaaaaaatctcagcatgaaattatacacactatgtattagatttgagc 864
Query: 665 gtttttt 671
|||||||
Sbjct: 865 gtttttt 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_l02.g1 MSMg01no494_l02.g1 CHROMAT_FILE:
MSMg01no494_l02.g1 PHD_FILE: MSMg01no494_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:35 2005
(668 letters)
>mm_chr4_37914760_37915827
Length = 1068
Score = 1185 bits (613), Expect = 0.0
Identities = 651/669 (97%), Gaps = 11/669 (1%)
Strand = Plus / Minus
Query: 1 tctctttgttggctcaggttagtcttcttttaataaaaatgcctcttatttactgaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tctctttgttggctcaggttagtcttcttttaataaaaatgcctcttatttactgaaagt 604
Query: 61 aaaaataataaaaaaataaaaataataaaaaataataattacaatgttgctggcatcctt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 603 aaaaataataaaaa---------aataaaaaataataattacaatgttgctggcatcctt 553
Query: 121 aaagtttaaggaaacaattcattacaaataaaaattttagtgcagaaacctcttacatag 180
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 552 aaagtttaaggaaacaatttattacaaataaaatttttagtgcagaaacctcttacatag 493
Query: 181 aactttattctgcaagagaaatttttaattgtaaaatacctttttgtaaaatatgccttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aactttattctgcaagagaaatttttaattgtaaaatacctttttgtaaaatatgccttt 433
Query: 241 cctgtcatgaattttctgcaactaaatgatgtcaggaatggttaaaactttttgttcatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cctgtcatgaattttctgcaactaaatgatgtcaggaatggttaaaactttttgttcatc 373
Query: 301 ctgcttttcgaaataatttatcttaagataaagagaatatatttcatgcagtttctggat 360
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 372 ctgcttttcgaaataatttatcttaagataaagaaaatatatttcatgcaatttctggat 313
Query: 361 catataattagtgatt-atataatttttaatttatattatttattattaaaagtaagaaa 419
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 catataattagtgattca-ataatttttaatttatattatttattattaaaagtaagaaa 254
Query: 420 aatgcttacaacatcttatgagtagtaggaagaaaaatcagagtaaggacacctttggat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aatgcttacaacatcttatgagtagtaggaagaaaaatcagagtaaggacacctttggat 194
Query: 480 tatttctgtccttaaaaagtaacagtaaagccacatggctttgaaaattgtacctttccc 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tatttctgttcttaaaaagtaacagtaaagccacatggctttgaaaattgtacctttccc 134
Query: 540 ttttaataaaagaagttttgaaaaattactacattacaagtgctgtttctgttactacag 599
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 133 ttttaataaaagaagttttgaaaaattactatattacaagtgctgtttctgttactacag 74
Query: 600 cctcattagccaaattcaaagaaatgaaaagatgggactaattattattgacatcattga 659
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 73 cctcattagccaaattcaaagaaatgaaaagatgagactaattattattgacatcattga 14
Query: 660 tattgaaga 668
|||||||||
Sbjct: 13 tattgaaga 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
