BAC Information

Click to search

BAC

Clone NameMSMg01-494M19
Chromosome4 (Build37)
Map Location 69,484,329 - 69,484,880
singlet/doubletsinglet
Overlap genenone
Upstream geneDbc1, LOC622491
Downstream geneLOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2, Megf9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494M19.T7 (MSMg01no494_m19.b1)MSMg01-494M19.TJ (MSMg01no494_m19.g1)
ACCAG571993AG571994
length748751
length of high quality
(start - end)
665 (32 - 696)537 (66 - 602)
definitionCHROMAT_FILE: MSMg01no494_m19.b1 PHD_FILE: MSMg01no494_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:44 2005CHROMAT_FILE: MSMg01no494_m19.g1 PHD_FILE: MSMg01no494_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCTT
CTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCT
TCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGA
TAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGAC
GGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCATTAGGTCCCATTTGT
CAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTT
TCCCCTGTGCCCATATTTTCAAGACTTTTCCCCACTTTCTCCTCTATAAG
TTTCAGTGTCTCTGGTTTTAAGTGAAGTTCCTTGATCCACTTAGATTTGA
CCTTAGTACAAGAAGATAAGTATGGATCGATTCGCATTCTTCTACATGAT
AACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCA
CTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTG
GGTTGATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCT
CTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGCTT
TAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAGAG
TTTTTGCTATCCTAGGCTTTTTGTTATTCCAGATGAATTTGCAAATTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTTGTTATTGCAGGACTAAAATCTGCAATCTTCTT
GCAGCTATTGCTGCTGCTGCTGCTGCTGCTGCTGGCTAGACAATCCGTCA
CTAGCTGCCACTCTAATGACCTTTCACACACTCCCAATGAAAGGCTGTTT
GTGGTATTCTGTCTCCTTGGATGTTTGCTCTGTGGCCTATTTAATGCAAT
AATCAAAGAGACTGGACTGAGCAGACTACAGTCTGGCTCAAGAGTGGGAC
AGAAGAGCTATTTTTGTCTGGCTTAAGTGGGGTCAGCAGGGCAGTCATAA
AAACCTAGAGAAAGAAGGAAGTCCAGGATGAGAAGCACCCATTAGGAAAT
GACAGAATGAACTGTCCAAACACAGAAAACAGATTCCAGTTTTTCTGGGG
TCACAGCAAGAAGGGTCAGTTCAGTGCTTTCCTCTTGGTCCAAGTTCAAG
GTTGTCCTCATTACATAGTCACTTTGAAGTCAACTTTGGCTACATAAACC
CTGCCTCAAAAAAACCAATATCATGAACATGGTAACAGTATACAACCAAC
CATGAAGGACTTCCTAGTACCACACCTTGAGCCATTGTACAGGCCACATA
CAGCTAGCCCTGGTATCAAACTTAGTCTAAGAATCAATTCTCATATTGCT
TGAACTGAAAAAGTTCACAGACATGATTTAGGTCATAACAGCTACTCCAC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_m19.g1 MSMg01no494_m19.g1 CHROMAT_FILE:
MSMg01no494_m19.g1 PHD_FILE: MSMg01no494_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:44 2005
         (537 letters)



>mm_chr4_69484144_69485080
          Length = 937

 Score =  990 bits (512), Expect = 0.0
 Identities = 535/552 (96%), Gaps = 15/552 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgttattgcaggactaaaatctgcaatcttcttgcagctat---------------tg 45
           |||||||||||||||||||||||||||||||||||||||||||               ||
Sbjct: 186 cttgttattgcaggactaaaatctgcaatcttcttgcagctattgctgctgctgctgctg 245

                                                                       
Query: 46  ctgctgctgctgctgctgctgctggctagacaatccgtcactagctgccactctaatgac 105
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctgctgctgctgctgctgctgctggctagacaatccgtcactagctgccactctaatgac 305

                                                                       
Query: 106 ctttcacacactcccaatgaaaggctgtttgtggtattctgtctccttggatgtttgctc 165
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctttcacacactcccaatgaaaggctgtttgtggtattctgtctccttggatgtttgctc 365

                                                                       
Query: 166 tgtggcctatttaatgcaataatcaaagagactggactgagcagactacagtctggctca 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgtggcctatttaatgcaataatcaaagagactggactgagcagactacagtctggctca 425

                                                                       
Query: 226 agagtgggacagaagagctatttttgtctggcttaagtggggtcagcagggcagtcataa 285
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 426 agagtgggacagaagagctatttctgtctggcttaagtggggtcagcagggcagtcataa 485

                                                                       
Query: 286 aaacctagagaaagaaggaagtccaggatgagaagcacccattaggaaatgacagaatga 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaacctagagaaagaaggaagtccaggatgagaagcacccattaggaaatgacagaatga 545

                                                                       
Query: 346 actgtccaaacacagaaaacagattccagtttttctggggtcacagcaagaagggtcagt 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 actgtccaaacacagaaaacagattccagtttttctggggtcacagcaagaagggtcagt 605

                                                                       
Query: 406 tcagtgctttcctcttggtccaagttcaaggttgtcctcattacatagtcactttgaagt 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tcagtgctttcctcttggtccaagttcaaggttgtcctcattacatagtcactttgaagt 665

                                                                       
Query: 466 caactttggctacataaaccctgcctcaaaaaaaccaatatcatgaacatggtaacagta 525
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 666 caactttggctacataaaccctgcctcaaaaaaaccaatatcatgaacatggcaacagta 725

                       
Query: 526 tacaaccaacca 537
           ||||||||||||
Sbjct: 726 tacaaccaacca 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)