Query= MSMg01no494_n08.b1 MSMg01no494_n08.b1 CHROMAT_FILE:
MSMg01no494_n08.b1 PHD_FILE: MSMg01no494_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:46 2005
(680 letters)
>mm_chr4_76649696_76650775
Length = 1080
Score = 1261 bits (652), Expect = 0.0
Identities = 673/680 (98%)
Strand = Plus / Minus
Query: 1 tgttcctgtcccctgagcaatgacacttgctctgtatttgtcggactactctaccacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tgttcctgtcccctgagcaatgacacttgctctgtatttgtcggactactctaccacttt 821
Query: 61 gtgcatttattctacttatatcatcatttcatttagttaaccaaacctccctctgagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gtgcatttattctacttatatcatcatttcatttagttaaccaaacctccctctgagaaa 761
Query: 121 aggaaaagtcaggaaggccaagaaattcataagactgcacagctcataaggtggagacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aggaaaagtcaggaaggccaagaaattcataagactgcacagctcataaggtggagacaa 701
Query: 181 gggactccaatcctgcaatggttacagcacaaaaatctccatgcctggccctacattgaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 700 gggactccaatcctgcaatggttacagcacaaaaatctccatgcctggccctacgttgaa 641
Query: 241 agatcttactccccatagttgaaggatcagcttttaattttagaacaaggttctcacttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 agatcttactccccatagttgaaggatcagcttttaattttagaacaaggttctcacttt 581
Query: 301 caggcatcttctgaagatgctagctgtagaagagaagaccaagatggcagatcacagaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 caggcatcttctgaagatgctagctgtagaagagaagaccaagatggcagatcacagaat 521
Query: 361 catctactgtggagaggctaaaaagaaattttgggttctattcaggcaagaattatttgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 catctactgtggagaggctaaaaagaaattttgggttctattcaggcaagaattatttgt 461
Query: 421 gagactgaacaaagttgaggagagaaagacagtaggaaagaattcatttttacttctgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gagactgaacaaagttgaggagagaaagacagtaggaaagaattcatttttacttctgtt 401
Query: 481 aaacatgcttccacctgcatctaatttaatttctaaatataggtattacacaaggtcatt 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aagcatgcttccacctgcatctaatttaatttctaaatataggtattacacaaggtcatt 341
Query: 541 gccaaaagcattctttctctctttcggacttcaactgtttcctccttagagaataatctc 600
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 340 gccaaaagcgttctttctctcttttggacttcaactgtttcctccttatagaataatctc 281
Query: 601 ccctcacaccagtcctacaaaccatgaaaatgtaatctacttgccatgttttaaaagtat 660
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 280 ccctcacaccaatcctacaaaccatgaaaatgaaatctacttgccatgttttaaaagtat 221
Query: 661 ccggaaacattctttgcata 680
||||||||||||||||||||
Sbjct: 220 ccggaaacattctttgcata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_n08.g1 MSMg01no494_n08.g1 CHROMAT_FILE:
MSMg01no494_n08.g1 PHD_FILE: MSMg01no494_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:46 2005
(664 letters)
>mm_chr4_76515830_76516893
Length = 1064
Score = 1164 bits (602), Expect = 0.0
Identities = 649/666 (97%), Gaps = 6/666 (0%)
Strand = Plus / Plus
Query: 1 ctagatattgtgataagactttcttaaaatatttatcataataagactatgcagaaatca 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ctagatattgtgataagactttcttaaaatatttatcataataagattatgcagaaatca 260
Query: 61 taatgcctctatacttactaggactgtggtatttgtaagagaaactggaaaaattagata 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgtctctatacttactaggactgtggtatttgtaagagaaactggaaaaattagata 320
Query: 121 gctaggtcattaacatatttgatgcacaattatgaagacaggagttcaaatatttagccc 180
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 321 gctaggtcattaacatatttgatgcacagttatgaagacaggagctcaaatatttagccc 380
Query: 181 tcatataaaagacagatgtgcatgcatctaaaacttcaacattaaaaagtaataaggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatataaaagacagatgtgcatgcatctaaaacttcaacattaaaaagtaataaggaga 440
Query: 241 gagttgtatccctgaagtgtactggctccctaatctagcaaagtcaataacttcaaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagttgtatccctgaagtgtactggctccctaatctagcaaagtcaataacttcaaaatc 500
Query: 301 cagtgcaagatcttgtgtcaaaaatatggtggtgaataattggaggaagccacccattgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtgcaagatcttgtgtcaaaaatatggtggtgaataattggaggaagccacccattgt 560
Query: 361 ggacttctggcctttatgatgtggtcacatgtgttgatgtactgttacaggtacacacac 420
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ggacctctggcctttatgatgtggtcacatgtgttgatgtactgttactggtacacacac 620
Query: 421 atccacaagaacacatacacatcataaacacacacacacatgcacgcagacacacacacg 480
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 621 attcacaagaacacatacacatcataaacacacacacacatgcacgca--cacacacatg 678
Query: 481 tgaacacatttgcacaggtaagtgcatgtgcgtgcacatacttgaaaatatttttgaaca 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 679 tgaacacatttgcacaggtaagtgcatgtgcgtgcacatacttgaatatatttttgaaca 738
Query: 541 aagagaaatttaagtaatatgatacttacactgatgacttatg--tgtttgaaaaaatca 598
|||| |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 739 aagaaaaatttaagtaatatgatacttacactgatga-tt-tgggtgtttgaaaaaatca 796
Query: 599 gagagagcacaaataaacaacttagtgatatgccataagatcttggaaaaatgagaataa 658
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gagagaacacaaataaacaacttagtgatatgccataagatcttggaaaaatgagaataa 856
Query: 659 ataaga 664
||||||
Sbjct: 857 ataaga 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
