BAC Information

Click to search

BAC

Clone NameMSMg01-495A14
Chromosome4 (Build37)
Map Location 67,425,952 - 67,426,619
singlet/doubletsinglet
Overlap genenone
Upstream geneTlr4, LOC100039379, Hmgb1-rs18
Downstream geneLOC433715, Tcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495A14.T7 (MSMg01no495_a14.b1)MSMg01-495A14.TJ (MSMg01no495_a14.g1)
ACCAG572175AG572176
length757744
length of high quality
(start - end)
674 (48 - 721)175 (75 - 249)
definitionCHROMAT_FILE: MSMg01no495_a14.b1 PHD_FILE: MSMg01no495_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:01 2005CHROMAT_FILE: MSMg01no495_a14.g1 PHD_FILE: MSMg01no495_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACCTTTTCCTAAGTCCATCTTCTAGGCCTTGCTGGGTGTCTTA
GCTCCTGCTGTTCCCCATTGCCTCGGGCCCACTCCCTTATGATATCCAAT
CAATACTTTTTCATTTTTCCAGAAAAAAAAAGTTAGTCAGGCAGTAGTGG
CACATACTTTAATCTCAGCACTTGGGAGGCAAAGACAGGCAGATATCTGA
GTTCAAATACAGCCTGGTCTGCAGAGTGAGTTCCAGAACAGCCAGGGCTA
AAGAAACCCTGTCTCAAAAGAACTACAACAACAAAAAAGCTATAGTAACT
GAGACAATGGACCAAAATGTAAACAGTTTACAACACATGGGTCAGGAACT
AAGTTTGATCCTCAGAAGCCTTGTAGACACAGGTATTGAACGCACATCTG
TAATCTACACACTTGTACAGGAAGATGAGAAGTGTAGGCCCAAGAGTCCT
TTGAAACTTTCAGACCAGCTGGCCTGGTACAAACGGTGCCTAATCATAGA
CCCTGATTCCACAAAGGGGGAAATTGAAGATATCTGAGTTTTTCCTGTGA
TCTCCACACACACAGGCTATCATACAAGCCCCCATTCACATACGACAGTA
TGCTCACATTTTCATAGACCACCTTCAAAACACATCACAGACATAGACTT
TTTTTTAAATGAACCTCTATAAAAGAATCACCTTCCTTTATATTCCATTT
ATACAAA
CCCGATGATGTGNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCCGCGAAATTCTTCTGACTTAATAATTTAATGGTT
ACAAACCTCTTTTAAATATTTGGGAAGTTTTATATTCATTTGGACTCAAG
ATTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTGAGACAGGGTTTCTCTG
TATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTTA
ACTCAAGAGATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCG
TGCGCCACCACGCCCGTTTTTTGACTCTAGATTTTATAAGATAAAATTAT
AATATGTTTTCTTTGTAATATTTATTAGACAAAAGCACTTCAAACATAAT
GCATCTGTGTTTTTTATGTATGTTATCTAGAAATAATAACTATAATCACA
TTGTTTTGAAATGGATCTCTAATACGTTTATCATCTTGTAAGTATATACT
CTATAAACATTAAACATAATCCTGTCTACTCCTATTTTGGAGTACCTGGA
AAACACCTTTTAACTTTCCTTTTTTTGTTTGGTTTGGTTTGGTTTGGTTT
GGTTTTTTTCGAGACAGGGTTTCTCTATATAGCCTTGGCTGTCCTGGAAC
TCACTCTATAGACCAGGCTAGCCTTGAACTCAGAAATCTGCCTGCCTCTG
CCTCCAAGTGCTGGGATTAAAGGTGTGTGCCCCCACCACTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_a14.b1 MSMg01no495_a14.b1 CHROMAT_FILE:
MSMg01no495_a14.b1 PHD_FILE: MSMg01no495_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:01 2005
         (674 letters)



>mm_chr4_67425748_67426819
          Length = 1072

 Score = 1253 bits (648), Expect = 0.0
 Identities = 664/670 (99%), Gaps = 2/670 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccttttcctaagtccatcttctaggccttgctgggtgtcttagctcctgctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccttttcctaagtccatcttctaggccttgctgggtgtcttagctcctgctgt 264

                                                                       
Query: 65  tccccattgcctcgggcccactcccttatgatatccaatcaatactttttcatttttcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccccattgcctcgggcccactcccttatgatatccaatcaatactttttcatttttcca 324

                                                                       
Query: 125 gaaaaaaaaagttagtcaggcagtagtggcacatactttaatctcagcacttgggaggca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaaaaaaaagttagtcaggcagtagtggcacatactttaatctcagcacttgggaggca 384

                                                                       
Query: 185 aagacaggcagatatctgagttcaaatacagcctggtctgcagagtgagttccagaacag 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 385 aagacaggcagatatctgagttcaaatacggcctggtctgcagagtgagttccaggacag 444

                                                                       
Query: 245 ccagggctaaagaaaccctgtctcaaaagaactacaacaacaaaaaagctatagtaactg 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 ccagggctaaagaaaccctgtctcaaaagaacaacaacaacaaaaaagctatagtaactg 504

                                                                       
Query: 305 agacaatggaccaaaatgtaaacagtttacaacacatgggtcaggaactaagtttgatcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agacaatggaccaaaatgtaaacagtttacaacacatgggtcaggaactaagtttgatcc 564

                                                                       
Query: 365 tcagaagccttgtagacacaggtattgaacgcacatctgtaatctacacacttgtacagg 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcagaagccttatagacacaggtattgaacgcacatctgtaatctacacacttgtacagg 624

                                                                       
Query: 425 aagatgagaagtgtaggcccaagagtcctttgaaactttcagaccagctggcctggtaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagatgagaagtgtaggcccaagagtcctttgaaactttcagaccagctggcctggtaca 684

                                                                       
Query: 485 aacggtgcctaatcatagaccctgattccacaaagggggaaattgaagatatctgagttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aacggtgcctaatcatagaccctgattccacaaagggggaaattgaagatatctgagttt 744

                                                                       
Query: 545 ttcctgtgatctccacacacacaggctatcatacaagcccccattcacatacgacagtat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttcctgtgatctccacacacacaggctatcatacaagcccccattcacatacgacagtat 804

                                                                       
Query: 605 gctcacattttcatagaccaccttcaaaacacatcacagacatagacttttttttaaatg 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 805 gctcacattttcatagaccaccttcaaaacacatcacagacatagactttttt--aaatg 862

                     
Query: 665 aacctctata 674
           ||||||||||
Sbjct: 863 aacctctata 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1072
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1062
Effective search space:   705168
Effective search space used:   705168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)