BAC Information

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BAC

Clone NameMSMg01-495A23
Chromosome4 (Build37)
Map Location 152,702,073 - 152,702,614
singlet/doubletsinglet
Overlap genenone
Upstream geneRpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833, LOC100042089
Downstream geneAjap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495A23.T7 (MSMg01no495_a23.b1)MSMg01-495A23.TJ (MSMg01no495_a23.g1)
ACCAG572193AG572194
length712780
length of high quality
(start - end)		243 (94 - 336)542 (79 - 620)
definitionCHROMAT_FILE: MSMg01no495_a23.b1 PHD_FILE: MSMg01no495_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:03 2005CHROMAT_FILE: MSMg01no495_a23.g1 PHD_FILE: MSMg01no495_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTTTCTTTTTTTTNTTTTTTNTTTTTTXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTCAGGATCCGCGGAATTCACTTGGACTACCCGATTCTTCT
ACGGCAAAGCTTTATTGCTTCATCTGAAGGGAGACCCCGAACGAGGAAAA
TGGTGCTGCTTATATACCCCTCCGTGTGACCTGTCAGCTCCTGATTAGCT
GCTCACTCATCACCCCACTACTACGCTCCAGGATGGGCAGTGACTTGGCA
CCAATTTACTCTTGCACCTGTGCACATTACTTGTTTACCAGTTAGGCACA
GCGGAGGCTCACGATGGCGATTGCTCACGGCTCTCCACACATCAACAAGA
AGTTTAGGTCACGTAATCAGTGGCTGGGTTAATGGCCCAGCCAGTGCTTT
CCCAGAAATCTTCCCCCCTCCCAGTTGGGAAACAAGGCATAAGGGGGCCA
AGTTTAATGAGGCCTACCTTTCCAAAGGGTCCAACTTGGATTATCAAAAA
ACCCAGGCCCGGGGCCCAAAAAAGTGTGGGGTTTCCCCAAAAAGGAATTT
TTTGGGCGCCGGAACCTTTGGGGGTTTTTAAAAAATTTTGTCCCCCCGGT
TTTCTAAAAGGGGGGGGGGGATGCCCCACAGGGGGGAAAAGGTTCTCTAA
ATAAAAATTCTTTGGGGGCCGCCGGGGGCCCCCCCCCGAAAGGGGGGTTG
GGGTTCCCCCCN

NNNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCCAACGTTTGCCACCGCGT
GAGCCAATAAATCCCTATTTTTGCTTCAGACAGTTTGTGTCAAGTTTTGT
GGCTTACAAAAGAAAAATCTGTAATGGATCCAGTCTTCTCTCACTTCCTG
AAACTTGCATCAGGCAGGGAATCTACAGACTAAAGTGCCATTTTCAGAAA
ACCGAGAGAGACAGCATAAACATAAAGAAAAAGCAGCAGGCACCTAACAC
CGTGGCTGTCACACAGCGCCCAGCCCACGTGTGGGGTGTGTGCAATGCCT
CTGCCTCTGCGGTCTGACCAGCTTGTGTGAGAGGATACTCGTTGTCTCTC
CATAGCTCACTCCCTCACCGAAGTTTGCAGCTTCATGTGCCTCGTCTCTG
TCAGAGCTAGGGCAGAAAAAATTAGTTTGATATATTTTAGAAACTCACTC
TCTGACTTCAGCATGAATTTAAAGTGAGAAATGAGGCAGCCTGCTTGGGA
ATCCGGTGGCAGCTGTGTCCACCTCTGCTCTTCAGNACTTTTTATTATTT
ATTTTGTCTGTTGGGGACAAGGATGAGGGGACACGCTGCAGAAGTTATTT
CTCTCTTTCCAAGACTGGATCCTGGGCTCCAGAGTAAGGGCCCAGACTTG
GCAGCAAGAAACTTTACTCACTGGGTCATCTCACTGGCCCCTCTTTATTT
AGTGTGGTGTGTGAATGCTTGTGTGCATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_a23.g1 MSMg01no495_a23.g1 CHROMAT_FILE:
MSMg01no495_a23.g1 PHD_FILE: MSMg01no495_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:03 2005
         (542 letters)



>mm_chr4_152701873_152702814
          Length = 942

 Score = 1042 bits (539), Expect = 0.0
 Identities = 541/542 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcccaacgtttgccaccgcgtgagccaataaatccctatttttgcttcagacagtttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcccaacgtttgccaccgcgtgagccaataaatccctatttttgcttcagacagtttgt 260

                                                                       
Query: 61  gtcaagttttgtggcttacaaaagaaaaatctgtaatggatccagtcttctctcacttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaagttttgtggcttacaaaagaaaaatctgtaatggatccagtcttctctcacttcc 320

                                                                       
Query: 121 tgaaacttgcatcaggcagggaatctacagactaaagtgccattttcagaaaaccgagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaacttgcatcaggcagggaatctacagactaaagtgccattttcagaaaaccgagag 380

                                                                       
Query: 181 agacagcataaacataaagaaaaagcagcaggcacctaacaccgtggctgtcacacagcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacagcataaacataaagaaaaagcagcaggcacctaacaccgtggctgtcacacagcg 440

                                                                       
Query: 241 cccagcccacgtgtggggtgtgtgcaatgcctctgcctctgcggtctgaccagcttgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccagcccacgtgtggggtgtgtgcaatgcctctgcctctgcggtctgaccagcttgtgt 500

                                                                       
Query: 301 gagaggatactcgttgtctctccatagctcactccctcaccgaagtttgcagcttcatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagaggatactcgttgtctctccatagctcactccctcaccgaagtttgcagcttcatgt 560

                                                                       
Query: 361 gcctcgtctctgtcagagctagggcagaaaaaattagtttgatatattttagaaactcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctcgtctctgtcagagctagggcagaaaaaattagtttgatatattttagaaactcac 620

                                                                       
Query: 421 tctctgacttcagcatgaatttaaagtgagaaatgaggcagcctgcttgggaatccggtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctctgacttcagcatgaatttaaagtgagaaatgaggcagcctgcttgggaatccggtg 680

                                                                       
Query: 481 gcagctgtgtccacctctgctcttcagnactttttattatttattttgtctgttggggac 540
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 gcagctgtgtccacctctgctcttcagtactttttattatttattttgtctgttggggac 740

             
Query: 541 aa 542
           ||
Sbjct: 741 aa 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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