BAC Information

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BAC

Clone NameMSMg01-495C09
Chromosome4 (Build37)
Map Location 116,767,064 - 116,767,619
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3
Downstream genePtch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495C09.T7 (MSMg01no495_c09.b1)MSMg01-495C09.TJ (MSMg01no495_c09.g1)
ACCAG572261AG572262
length710770
length of high quality
(start - end)
557 (84 - 640)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no495_c09.b1 PHD_FILE: MSMg01no495_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:10 2005CHROMAT_FILE: MSMg01no495_c09.g1 PHD_FILE: MSMg01no495_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCCTTNNNNTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCC
AAGACCGCGGAATTCTGGAACATTCTCCGCTACCTAGAAAGATTCTGCCT
CAGAAACAAAATACATTTTTTTGGGGAAAAAAAAAGACTTCAATAAATCT
GTTGTTCTGATACTGCTATCACATCTGGCTAGCCTCTTGCTCAATTCTTC
CAGACTTCTTAATCATTATATCATAAATATTTTATATTACTACACAGTCC
TCTCATCAATCATTTGCAGAATGTCCTCAGGACAGATTCCCAGAAATGGG
GTTGTTTGGGTCAAAAAGCATGAATATGGTTTTGGCCTTGCTACATACTG
CCAAACTTGTGCAAATTAACATCATCAGCTCCAGGGCTTAATCCTAAGGG
TTCCCCAGTTGGTTTAAGGGGTGGACAGTTAAGGAGGAATGAATGTGTCT
GTCTACAACACTGCTACTCTGTGGCTAAGTGGCACCTGGGCAGGAAAGGA
AGCCTTGGGCCTGGAGAGAGAGCTCAGCAGTTAAGGCCACCTTTTGTTTT
TGCAGAGGACCTGGGTTTGGCTTCCAGCATCCACAAAGGAGAGTTCACAG
CTACCTGTAACTCCAGCTCCAGGGGATTCAACACCTGGCCTCTGAGGGCA
AGTGTATATACACATACACACACACACACGCACACGCACACGCACACGTG
TCATATACAT
ATGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGTCTATGTA
GGAAGACCATGTCTCCAAGAAGAAAAAGAAAAAGGAAGCATAAGAGATTG
GTGTGTAGCCCTGGCTGGCCTAAAACTCACCACTACACTATACTGGCCCT
GAACTCACTCACACAGATCACCTGCTTCTCCCTCTCTCGGATCAATGGTG
TGTGCCGTGCCCAGTAAGGCAGAGTTTCTCCACGTAGCCCTGGCTATCCT
GGAATTCCCTTTGTAAGTCTGGTATGACCTCAGACTCAAAAGATCCACCT
GTCCCTGCCTCCCTAGTGCTGGGATTAAGGTTTCCAGCTGCCTAAACAAT
TTTTTTTAATTTTTTAAATCACTGGGCTGGCTCATTATAGCAGCAGATTC
TCAGCATTTGAGAGACAGATGCAGGAGGACCCATATTTAGAAGCCAACCT
GGTCTACACTGTGTTCAAAGATAAAGATCAAAATGTTGTCGTGTGTGTCG
CGCGTTTTCTACTTTTCCCCTACCTGCTTTTTATCTTGTTACTTTCCTTT
TTCATTTTTCTCCTTTTTTACATCTTTTTCTCCTCCTCCTCCGCTATCCC
TGCTCTTCCTTTCCCTTCCTTTTACCTCCTTCCGCTCTTCCCTCTTTTCC
CCCTATTCCCGCCTCCCCTTTCTTCCCCCTTTCCCGCGTCACTTTTCGCC
GCCCTTTTTTTCCATCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_c09.b1 MSMg01no495_c09.b1 CHROMAT_FILE:
MSMg01no495_c09.b1 PHD_FILE: MSMg01no495_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:10 2005
         (557 letters)



>mm_chr4_116766724_116767680
          Length = 957

 Score = 1023 bits (529), Expect = 0.0
 Identities = 550/557 (98%), Gaps = 1/557 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagaaagattctgcctcagaaacaaaatacatttttttggggaaaaaaaaagacttcaa 60
           |||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||
Sbjct: 896 ctagaaagattctgcctcagaaacaaaatac-gttttttgggggaaaaaaaagacttcaa 838

                                                                       
Query: 61  taaatctgttgttctgatactgctatcacatctggctagcctcttgctcaattcttccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 taaatctgttgttctgatactgctatcacatctggctagcctcttgctcaattcttccag 778

                                                                       
Query: 121 acttcttaatcattatatcataaatattttatattactacacagtcctctcatcaatcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 acttcttaatcattatatcataaatattttatattactacacagtcctctcatcaatcat 718

                                                                       
Query: 181 ttgcagaatgtcctcaggacagattcccagaaatggggttgtttgggtcaaaaagcatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ttgcagaatgtcctcaggacagattcccagaaatggggttgtttgggtcaaaaagcatga 658

                                                                       
Query: 241 atatggttttggccttgctacatactgccaaacttgtgcaaattaacatcatcagctcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 atatggttttggccttgctacatactgccaaacttgtgcaaattaacatcatcagctcca 598

                                                                       
Query: 301 gggcttaatcctaagggttccccagttggtttaaggggtggacagttaaggaggaatgaa 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 597 gggcttaatcctaagggttccccagttggtttaaggggtgggcagttaaggaggaatgaa 538

                                                                       
Query: 361 tgtgtctgtctacaacactgctactctgtggctaagtggcacctgggcaggaaaggaagc 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 537 tgtgtctgtctacaacactgctactctgtggctaagaggcacctgggcaggaatggaagc 478

                                                                       
Query: 421 cttgggcctggagagagagctcagcagttaaggccaccttttgtttttgcagaggacctg 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cttgggcctggagagatagctcagcagttaaggccaccttttgtttttgcagaggacctg 418

                                                                       
Query: 481 ggtttggcttccagcatccacaaaggagagttcacagctacctgtaactccagctccagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ggtttggcttccagcatccacaaaggagagttcacagctacctgtaactccagctccagg 358

                            
Query: 541 ggattcaacacctggcc 557
           |||||||||||||||||
Sbjct: 357 ggattcaacacctggcc 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)