Query= MSMg01no495_d13.b1 MSMg01no495_d13.b1 CHROMAT_FILE:
MSMg01no495_d13.b1 PHD_FILE: MSMg01no495_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:15 2005
(600 letters)
>mm_chr4_126159856_126160850
Length = 995
Score = 1054 bits (545), Expect = 0.0
Identities = 564/573 (98%), Gaps = 5/573 (0%)
Strand = Plus / Minus
Query: 26 ctttcacacagtctaagatctgtgattaagggaggaagggcggggctagatggcgcatgc 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctttcacacagtctaagatctgtgattaagggaggaagggcggggctagatggcgcatgc 583
Query: 86 tcatttccccactcccgccctcccaacccccagctcaccaatcacgtgcctggtggggaa 145
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 582 tcatttccccactcccgccctcccaccccccagctcaccaatcacgtgcctggtggggaa 523
Query: 146 agaggaaagccacgtggtgtggaaaggctttccgcgcgacgctaatgagtttgctctctg 205
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 522 agaggaaagccacgtggtgtggaaaggctttccgcgcgacgctaatgagttcgctctctg 463
Query: 206 gactctcagaactcagggagattctttctctcaagccatcctctcaaggacacagtcagg 265
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 462 gactctcagaactcagggagattatttctctcaagccatcctctcaaggacacagtcagg 403
Query: 266 caagtgacttaaactcttcagtttgaagtgctgaagctgatggaaagtgggctcctgagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 caagtgacttaaactcttcagtttgaagtgctgaagctgatggaaagtgggctcctgagg 343
Query: 326 gtggggaagaccccgtgggtgagtggaggaccggtctatgttggctcttccttctctttg 385
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 342 gtggggaagaccccgtgggtgagtggagga-----ctatgttggctcttccttctctttg 288
Query: 386 acccgtgctttcttctcagtgttcagcgtgcagaatgtttcttcagtagaaacagctgag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 acccgtgctttcttctcagtgttcagcgtgcagaatgtttcttcagtagaaacagctgag 228
Query: 446 aaagctgggcatggtgatactcacctttaatcccagcactcgggaagcaaaggcagcctt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aaagctgggcatggtgatactcacctttaatcccagcactcgggaagcaaaggcagcctt 168
Query: 506 tctctataagttcgaggccagcctggtttacagagtgagcccaggacagccagggctctg 565
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tctctgtaagttcgaggccagcctggtttacagagtgagcccaggacagccagggctctg 108
Query: 566 ttacacagtgaagctcaacctcggaaaaagaaa 598
|||||||||||||||||||||||||||||||||
Sbjct: 107 ttacacagtgaagctcaacctcggaaaaagaaa 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 995
Length adjustment: 10
Effective length of query: 590
Effective length of database: 985
Effective search space: 581150
Effective search space used: 581150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_d13.g1 MSMg01no495_d13.g1 CHROMAT_FILE:
MSMg01no495_d13.g1 PHD_FILE: MSMg01no495_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:15 2005
(597 letters)
>mm_chr4_126018271_126019267
Length = 997
Score = 1100 bits (569), Expect = 0.0
Identities = 590/597 (98%)
Strand = Plus / Plus
Query: 1 tcaaaaaggatgaaagggaccaacacttcacgaatgttgacaagtgagctgtctttcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaaaaggatgaaagggaccaacacttcacgaatgttgacaagtgagctgtctttcttt 260
Query: 61 gaggcactcacacaacttctaagagacaagtgaactacatggaactgcagcaggagaata 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 gaggcactcacacaacttctaagagacaagtgaactacacggaactgcagcaggagaata 320
Query: 121 cctgcagggctgaggtaaacaaagtgtttgctgtgttttgaggcatggtctcatgttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgcagggctgaggtaaacaaagtgtttgctgtgttttgaggcatggtctcatgttgct 380
Query: 181 gaggctggctttgaattactgatgctcctgagggctgggcttataggtgtaccttaactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggctggctttgaattactgatgctcctgagggctgggcttataggtgtaccttaactt 440
Query: 241 ggcttatttgaacatataacttagtttactgacacccagtcaaaattatgcagagatgtc 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcttaactgaacatataacttagtttactgacacccagtcaaaattatgcagagatgtc 500
Query: 301 agttaaacttcctggcaaaacattactctaaaatttttaatcagaaagggaacaaactat 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 agttaaacttcctggcaaaacattactctaaaaattttaatcagaaagggaacaaactat 560
Query: 361 tctaccagtttccaaagtgaatttcctaagaattaagcatctgaaaggcccaccacgtgt 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctaccagtgtccaaagtgaatttcctaagaattaagcatctgaaaggcccaccacgtgt 620
Query: 421 tttggatggatagctctctgggcttcacttctatggctgggctccaagtgctcacaccgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttggatggatagctctctgggcttcacttctatggctgggctccaagtgctcacaccgc 680
Query: 481 ctgtgactgagatctcgagccatttctactcagcagcatctggttttaattccccaagac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgtgactgagatctcgagccatttctactcagcagcatctggttttaattccccaagac 740
Query: 541 acacttgccaccctgcgatctacaaaacacgatgaaagtcattattatgctactggc 597
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 741 acacttgccaccctgcgatctacaagacacgatgaaagtcattattaggctactggc 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
