BAC Information

Click to search

BAC

Clone NameMSMg01-495E08
Chromosome4 (Build37)
Map Location 64,261,613 - 64,261,945
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
Downstream genePappa, Astn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495E08.T7 (MSMg01no495_e08.b1)MSMg01-495E08.TJ (MSMg01no495_e08.g1)
ACCAG572354AG572355
length733859
length of high quality
(start - end)
636 (82 - 717)---
definitionCHROMAT_FILE: MSMg01no495_e08.b1 PHD_FILE: MSMg01no495_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:19 2005CHROMAT_FILE: MSMg01no495_e08.g1 PHD_FILE: MSMg01no495_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGTCTATAATTTGCGGCGCTAAACGACTCACATCAAAGACGGAGCCG
CGGAATCTTTGTTACATCTGAGGCCCATTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTCTTGCCTTGCAGAAGCTTTGCAGTTTCATG
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTCTTCT
ATTCAGGAATTTTGTTTTTGTGCCCATATCTTCGATGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCAT
TCTTCTACATGATAACCACCAGTTGTGCAAGCACCATTTGTTGAAAATGC
TGTCTTTCTTCCACTAGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAAAGTAGCTTTAGATCCT
GTCAGGTTGACATATAGCAACACAACACACACTACTATTAAGAAGTACTA
TTAATGAACTATTAAGTTCATTATATTTTAGAACTCAGGTGTGTACTAGA
AGTTTTAGAGGTGAAGGCAATACTCTGTCTTTA
CCCCCATGCTGTGNGAGGCCTGGCGGCCGCCTGGTTGAACGATCTCTCCG
TGACCTATACAAGTCCCGCCCCACCTCCCGGGTCAGGAAGTAGGAATGGG
TGGGTTGACAAGCCCGGGGAGGTGGCAGGCTATAGGTGCTTCCCCCCCCC
CACCCCCCCCCCCTCCATCCCCCCGCCCGGCCCCCCCGCCCACCCCCTCC
TTCCCGTCCCCCCCCCCCCCCCCTACCTCTCCCCCCTGCCCCGCCCCGCT
CTTTTTTTTCNCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCC
CACCCCCCCCCCCCCACCCCCCCCCCCTTTGGTAGTTTTCCGGCCCACCC
CCCCCCGACCCATACCCCCCCCCCCTTTTTCTCTCCCCCTCCTCCCCCCG
CCCCCCCCCCCCCCCTCCTCCCCCCATTCCCTCCCCCCCCCCCCCCCCCC
CCCTCCGCCCCCCCCCCCCCCTCCCCCCCCCCTCCTCCCTCTCCCGTCCC
CCCCCCTCCCCCCCCCCCCCCCCCTTTCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCGCCCCCCCCCCCCCCCCCCCTCCCCCTCCCCCCTCTCCCCCCCC
CCCCCTTTTCCCCCCCTCCCCCCCTTTCCCCCTCCCCCCCCCCTCCCCCC
CCCCCCCCCCCCCCCCCCTCCTCCTCCTCCCTCTCCCCCCCTCTTCCCCC
CCCCCCCCCTCCCCCCCTCCCCCCCCCCCCCCCCTCTCTTTCCCCCCCCC
CCCCTCCCCCCCCCCCCCTCCCCCCCCTTCCCCCCCCCCCCCCCCCCGCC
CCCCTCTCCTTCCCCACCCCCCTCCCCCCCCGCCCCCCCCTCCTCCCCCC
CCCCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_e08.b1 MSMg01no495_e08.b1 CHROMAT_FILE:
MSMg01no495_e08.b1 PHD_FILE: MSMg01no495_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:19 2005
         (636 letters)



>mm_chr4_64260910_64261945
          Length = 1036

 Score =  621 bits (321), Expect = 0.0
 Identities = 330/333 (99%)
 Strand = Plus / Minus

                                                                        
Query: 304  gtggagttccttgatccacttagatttgaccttagtacaaggagataggaatggatcaat 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 gtggagttccttgatccacttagatttgaccttagtacaaggagataggaatggatcaat 977

                                                                        
Query: 364  tcgcattcttctacatgataaccaccagttgtgcaagcaccatttgttgaaaatgctgtc 423
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 976  tcgcattcttctacatgataaccaccagttgtgccagcaccatttgttgaaaatgctgtc 917

                                                                        
Query: 424  tttcttccactagatggttttagctcccttgtcgaagatcaagtgaccataggtgtgtgg 483
            ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 916  tttcttccactggatggttttagctcccttgtcgaacatcaagtgaccataggtgtgtgg 857

                                                                        
Query: 484  gttcatttctgggtcttcaaagtagctttagatcctgtcaggttgacatatagcaacaca 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  gttcatttctgggtcttcaaagtagctttagatcctgtcaggttgacatatagcaacaca 797

                                                                        
Query: 544  acacacactactattaagaagtactattaatgaactattaagttcattatattttagaac 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  acacacactactattaagaagtactattaatgaactattaagttcattatattttagaac 737

                                             
Query: 604  tcaggtgtgtactagaagttttagaggtgaagg 636
            |||||||||||||||||||||||||||||||||
Sbjct: 736  tcaggtgtgtactagaagttttagaggtgaagg 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)