Query= MSMg01no495_e16.b1 MSMg01no495_e16.b1 CHROMAT_FILE:
MSMg01no495_e16.b1 PHD_FILE: MSMg01no495_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:20 2005
(567 letters)
>mm_chr4_46945822_46946788
Length = 967
Score = 1046 bits (541), Expect = 0.0
Identities = 556/561 (99%), Gaps = 1/561 (0%)
Strand = Plus / Minus
Query: 1 tgtaaggggtgtctctctttagatgaattttgcacctgttgggatgctcgagcttgcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtaaggggtgtctctctttagatgaattttgcacctgttgggatgctcgagcttgcagc 502
Query: 61 agcagcctcacgtggcttgcttctgtcctgatcatagcatggagccaggtaggaggactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcagcctcacgtggcttgcttctgtcctgatcatagcatggagccaggtaggaggactc 442
Query: 121 cgttttgagatctcccttggttcagggcttccagctcattctcgctgctactgcccaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgttttgagatctcccttggttcagggcttccagctcattctcgctgctactgcccaggc 382
Query: 181 tgcagtggtgactcctacaccttagcagctcagcagttaccattgattcttctggaatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcagtggtgactcctacaccttagcagctcagcagttaccattgattcttctggaatga 322
Query: 241 ggacttgaatacaggacccagggcctgtcctagtgggggtagaggggatacaggaatggc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggactcgaatacaggacccagggcctgtcctagtgggggtagaggggatacaggaatggc 262
Query: 301 tgtggaggaacaggagcctgcctcagtaatgggggtgttggagaggagaatgctgagatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtggaggaacaggagcctgcctcagtaatgggggtgttggagaggagaatgctgagatg 202
Query: 361 accttgaactcttgagtgttggcattccaggtatgcaccatgtgcccaatttatgcagaa 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgaactcttgagtgttggcattccaggtatgcaccatgtgcccaatttatgcagaa 142
Query: 421 atggggatcgaacccaggacttgctgggaccagaactctagcacctcagcaaacagccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 141 atggggatcgaacccaggacttgctgggaccagaactctagcacctcagcaaacagctct 82
Query: 481 agccctg-aattttttttttgccttctaaaattcatgtttgcatctcagatccaccaccc 539
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 agccctggaattttttttttgccttctaaaattcatgtttgcatctcagatccaccaccc 22
Query: 540 ccaccccaaccctagtcactg 560
||||||||||||| |||||||
Sbjct: 21 ccaccccaacccttgtcactg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_e16.g1 MSMg01no495_e16.g1 CHROMAT_FILE:
MSMg01no495_e16.g1 PHD_FILE: MSMg01no495_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:20 2005
(172 letters)
>mm_chr4_46785317_46785889
Length = 573
Score = 327 bits (169), Expect = 2e-94
Identities = 172/173 (99%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 1 tgttgagaaagaagagggaggtgggtgttggggagggataa-gagattcacaatctcatg 59
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tgttgagaaagaagagggaggtgggtgttggggagggataatgagattcacaatctcatg 260
Query: 60 agcaaatgggtcttcggagcctttctcactactcccacaggggctggcaggagccaggct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaaatgggtcttcggagcctttctcactactcccacaggggctggcaggagccaggct 320
Query: 120 tggagtgtcacatggagagtgtgcaagtcacctctgcatgagcacatacaggc 172
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggagtgtcacatggagagtgtgcaagtcacctctgcatgagcacatacaggc 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 573
Length adjustment: 8
Effective length of query: 164
Effective length of database: 565
Effective search space: 92660
Effective search space used: 92660
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
