CCCCNTTTTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATCCAAATTCACATCTCAGAATATTTTATAGACA
CTTTACGTCTAATAAATGTTTGTTGAAAGCATGATTGATGGCAGCTGCAG
GATGTTTGCATTTGTTTACTCCAGGATGGCTTATCCTTTTCAGTTGCATT
AAGTAATCACTTAGAAATGGAATAAAAAGGAAGCCTCAGAGTTTCAGTGT
GATGGAGAACTATGAAACTGCTTCAGATATTGTTAGCAGCAAATTATCCC
TGGAGATGAACAAGGGGAATCACAGAGGAGGAGGCTACGGAGATGAAATC
ATTGCACTGAGAAGAGAAGCGAGAGCATTTCTCTTGCCTGCTGTTTCCAT
TCTCTCCCACAGATCCCCAGCCAGCTCAAGGAAAGGTGAACCCAAGGGCA
CATGTGAAGTAGAAATGATGCATTTTAACGAGCATGGGTGTCAGTGCCAA
AACCCTGCCTGCATTCATGCCCCAGAATGTAAGTGGGAGGGCAGTTGAGG
AGCCATGGCATCCAAGAGAATCTTTCAGAGCATTCTGGCTCAGGAAGGGC
AAAAGGAGAAAAGCAAGAAAAAAAAATGAATAANAAGAAAGAACCGTCGC
TGAAAACGTGATTATGAACAGTGCCGTTCTCATTATAGCGGGGGACTTTG
ACTTAAGTGTAAGAATAAAAAATCTTTGCTTAGAAT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTA
ATAGGGTTATTTGAATTTCTGGAGTCCAGCTTCTTGAACTCTTTGTATAT
ATTGGATATTAGTCCCCTATCAGATTTAGAATTGGTAAAAATCCTTTCCA
CATCTGTTGGTAGCCTTTTTGTCTTATTAACTGTGTCTTTTGCCTTACAG
AAGCTTTGCAATTTTATGAGGTCCCATTTGCCAATTCTTGGTCTTACAGC
ACAAGCCATTGCTTTTCTGTTTAGGAATTTTTCCCCTGTGCCCATATCTT
TGAGACTTTTCTCCACTTTCTCCTCTATAAATTTCAGTGTCTCTGTTTTT
ATGTGGAGTTCTTTGATCCACTTAGACTGGAACACAGGGCCCCAATGGAG
GCGCTAGAGAAAGTACCCAAGGAGCTGAACCGGTCTGCAACCCTATAGGT
GGATCAACAATATGAACTAACCAGTAACCCCCCCCCCCAAATTCTTGTCT
CTAGCTACATACGTAACAGAAGATGGCCTAGTCAACCATCATCAAGAAGA
GAGGCACCTTGGTCTTGCAAACTTTATATGCCCCAGTATAGGGGAATGCC
AGGGCCAAGAAGTGGGAGAGGGTGGGTTAGGGGAGCTGGGCATGTTGAGG
TTATTCGGAACTCTTGATAATCTTTTGCTCTTCTTCCTTCCATTTGTTTT
C

Query= MSMg01no495_h21.b1 MSMg01no495_h21.b1 CHROMAT_FILE:
MSMg01no495_h21.b1 PHD_FILE: MSMg01no495_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:34 2005
         (588 letters)



>mm_chr4_68510343_68511328
          Length = 986

 Score = 1065 bits (551), Expect = 0.0
 Identities = 575/584 (98%), Gaps = 2/584 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatccaaattcacatctcagaatattttatagacactttacgtctaataaatgtt 64
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatccaaagaaacatctcagaatattttatagacactttacgtctaataaatgtt 264

                                                                       
Query: 65  tgttgaaagcatgattgatggcagctgcaggatgtttgcatttgtttactccaggatggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgttgaaagcatgattgatggcagctgcaggatgtttgcatttgtttactccaggatggc 324

                                                                       
Query: 125 ttatccttttcagttgcattaagtaatcacttagaaatggaataaaaaggaagcctcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatccttttcagttgcattaagtaatcacttagaaatggaataaaaaggaagcctcaga 384

                                                                       
Query: 185 gtttcagtgtgatggagaactatgaaactgcttcagatattgttagcagcaaattatccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttcagtgtgatggagaactatgaaactgcttcagatattgttagcagcaaattatccc 444

                                                                       
Query: 245 tggagatgaacaaggggaatcacagaggaggaggctacggagatgaaatcattgcactga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggagatgaacaaggggaatcacagaggaggaggctacggagatgaaatcattgcactga 504

                                                                       
Query: 305 gaagagaagcgagagcatttctcttgcctgctgtttccattctctcccacagatccccag 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaagagaagcgagagaatttctcttgcctgctgtttccattctctcccacagatccccag 564

                                                                       
Query: 365 ccagctcaaggaaaggtgaacccaagggcacatgtgaagtagaaatgatgcattttaacg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccagctcaaggaaaggtgaacccaagggcacatgtgaagtagaaatgatgcattttaacg 624

                                                                       
Query: 425 agcatgggtgtcagtgccaaaaccctgcctgcattcatgccccagaatgtaagtgggagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcatgggtgtcagtgccaaaaccctgcctgcattcatgccccagaatgtaagtgggagg 684

                                                                       
Query: 485 gcagttgaggagccatggcatccaagagaatctttcagagcattctggctcaggaagggc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 685 gcagttgaggagccatggcatccaagagaatctttcagagcattctggctcagaaagggc 744

                                                       
Query: 545 aaaaggagaaaagcaagaaaaaaaaatgaataanaagaaagaac 588
           |||||||||||| |||||||||||  ||||||| ||||||||||
Sbjct: 745 aaaaggagaaaaacaagaaaaaaa--tgaataaaaagaaagaac 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 986
Length adjustment: 10
Effective length of query: 578
Effective length of database: 976
Effective search space:   564128
Effective search space used:   564128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)