BAC Information

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BAC

Clone NameMSMg01-495I01
Chromosome4 (Build37)
Map Location 5,305,506 - 5,306,117
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039297, LOC622019, Impad1, LOC100039338
Downstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495I01.T7 (MSMg01no495_i01.b1)MSMg01-495I01.TJ (MSMg01no495_i01.g1)
ACCAG572531AG572532
length685724
length of high quality
(start - end)
---613 (87 - 699)
definitionCHROMAT_FILE: MSMg01no495_i01.b1 PHD_FILE: MSMg01no495_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:35 2005CHROMAT_FILE: MSMg01no495_i01.g1 PHD_FILE: MSMg01no495_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCTTATATTTGCGGCGCTAATAGACTACTATATTTTCAAAGTAGGG
AATTAAAAGAAATGCGCAAAAGAGTTTTAGATCTTTTTTCTCAGTGATTA
TTGCTACCTAAAATACATTATGGTCTGTTTGAATATGAAGCTGCCTTGAG
TCCAGAATAAAATTACAGAGACAGACTACTGTGTCATCCTTTTCTTCTGG
TGTCTATCNAGACCCTCTCACNTACNGAAAAAAGTTTCNNGTTTGTACTT
GGCNTGANAACAAGAGAATAGGNNTGNNTGAGGTTCAAGAAAAGGAAAAG
GTTCAAATTCGTGNNTTTTAATTTTCGGCAAAAAAAAAAAAGAATTGGGT
TCTAGGCGCATTTTTTGNNTTTTAAGGGAATTTCTTAAGGGGTCTTAAAA
ACGGGACTTTAGGCCGGTTTTTTTTTCTTGGTTAAAAAAAAAAAAAAGTT
TTCTTTAAAAAAAAGTCCTGTGTTTTTTTTTTCTCAAAAAAAAAAATAAT
TTTTAAAAATTTAAAAAAGGGGGTTTTTTTTTAAAAAAAGGTGTTAAAAA
AAACTTTCTCCTTTAAAAAATTTTTTTTTAAAACAATATTTACCCAAGGG
GGGGTTTTTTTTATTAAAAAAAAANNAANTTTTTTTTTGGGTTATATTTT
TTTTTAAAAAAAAAATATTTTGGGGGGGGGGGGTG
CAAAATATCCGATGAAGTGTGTAGGCCGGGNGGCCGCCTGGTTTTCATAT
GGGGGTNGAACTATANAAGGTTGCGCAAAAAGGGGTGCATAANCAATACT
GAGAGTCATCTATTTAACCTAATTATCCAAAGAGAATTATTTTTATAGGT
GTAGTGCAGCAGAGTAAAATCCATTTCCAAATCACAAAAGTATGAATTGA
TTCCTTCTTCCAAAGCATTATTAAATACTCCTGAGGATGGGTGAAAAGTG
TGAAGCAATGTGAAAACTTTTGATAATTAGACTGAATTTAGAACTAGTTT
TTTTTTTAATGAATCTTATTTTTATTTTTTTTTTTATCAAGTGGATGCAT
GACCATAATTACTCAGTAATTTTAAATATGTTCTGTTTTACACAACCTCT
CCCAGGAAGCATCATGTGATACACTAGTAAAAACTTGTGAAATATTAAGA
AAATTCAATCTACTAAGTCATATTTGCCATGATAACAAAGAAGAAAAAAT
TATTTCTAAGGTACAGATGCATAAAATATTTAGAATCACTGATTTGTTTC
ATAATCCACTGTGTTAATTAGCAGGGTAATGATCAATACTGTTGATAGAA
CAATTTACATTTAATAGAAAGCATAGATAGAGAGATGAAGAGAAAGCTGC
TCTCCAGTGGAATGACAGAGATGAGAGGCCAGGTACGATACTCATGAGGA
CTGAGACTCTCTCACTTGAGTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_i01.g1 MSMg01no495_i01.g1 CHROMAT_FILE:
MSMg01no495_i01.g1 PHD_FILE: MSMg01no495_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:35 2005
         (613 letters)



>mm_chr4_5305306_5306318
          Length = 1013

 Score = 1106 bits (572), Expect = 0.0
 Identities = 602/621 (96%), Gaps = 17/621 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcataancaatactgagagtcatctatttaacctaattatccaaagagaattatttttat 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcataatcaatactgagagtcatctatttaacctaattatccaaagagaattatttttat 260

                                                                       
Query: 61  aggtgtagtgcagcagagtaaaatccatttccaaatcacaaaagtatgaattgattcctt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgtagtgcagcaaagtaaaatccatttccaaatcacaaaagtatgaattgattcctt 320

                                                                       
Query: 121 cttccaaagcattattaaatactcctgaggatgggtgaaaagtgtgaagcaatgtgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccaaagcattattaaatactcctgaggatgggtgaaaagtgtgaagcaatgtgaaaa 380

                                                                       
Query: 181 cttttgataattagactgaatttagaactagttttttttttaatgaatcttatttttat- 239
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| 
Sbjct: 381 cttttgataattagactgaatttagaactagtttttttt--aatgaatcttatttttata 438

                                                                       
Query: 240 ---t----tttttttttatcaagtggatgcatgaccataattactcagtaattttaaata 292
              |    ||       |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aactaaaatt-------atcaagtggatgcatgaccataattactcagtaattttaaata 491

                                                                       
Query: 293 tgttctgttttacacaacctctcccaggaagcatcatgtgatacactagtaaaaacttgt 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgttctgttttacacaacctctcccaggaagcatcatgtgatacactagtaaaaacttgt 551

                                                                       
Query: 353 gaaatattaagaaaattcaatctactaagtcatatttgccatgataacaaagaagaaaaa 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gaaatattaagaaaattcaatctactaagtcatatttgccatgataacaaagaagaaaaa 611

                                                                       
Query: 413 attatttctaaggtacagatgcataaaatatttagaatcactgatttgtttcataatcca 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 attatttctaaggtacagatgcataaaatatttagaatcactgatttgtttcataatcca 671

                                                                       
Query: 473 ctgtgttaattagcagggtaatgatcaatactgttgatagaacaatttacatttaataga 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ctgtgttaattagcagggtaatgatcaatactgttgatagaacaatttacatttaataga 731

                                                                       
Query: 533 aagcatagatagagagatgaagagaaagctgctctccagtggaatgacagagatgagagg 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aagcatagatagagagatgaagagaaagctgctctccagtggaatgacagagatgagagg 791

                                
Query: 593 ccaggtacgatactcatgagg 613
           |||||||||||||||||||||
Sbjct: 792 ccaggtacgatactcatgagg 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)