BAC Information

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BAC

Clone NameMSMg01-495I14
Chromosome4 (Build37)
Map Location 92,264,325 - 92,264,825
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495I14.T7 (MSMg01no495_i14.b1)MSMg01-495I14.TJ (MSMg01no495_i14.g1)
ACCAG572557AG572558
length732749
length of high quality
(start - end)
579 (54 - 632)536 (81 - 616)
definitionCHROMAT_FILE: MSMg01no495_i14.b1 PHD_FILE: MSMg01no495_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:37 2005CHROMAT_FILE: MSMg01no495_i14.g1 PHD_FILE: MSMg01no495_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTTCGCTCTGAGCCCCATTTTTTAATGGGGTTA
TTTGATTTTCTGGTGTCCACCTTATTGAGTTCTTTATATATATTGGATAT
TAGTCCCCTATCTGATTTTGGTTTGGTAAAGATACTTTCCCAAACTGTTG
GTGGCCTTTTTGTCTTATTGATGCTGTCTTTTGCCTTACAGAGACTTTGC
AATTTTATGAGGCCCATTTGTTGATTCTCAATCTTACAAGACATGCCATT
GCTGTTCTATTCAGGAATTTTTCCTATCTGCCTATAACTTCAAGGCTTTT
CACCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTT
CCTTAATCCACTTAGATTTGACCTTAGTACAAGGTGATAAGAATGGATCA
ATTCACATTCTACTACATGATAACTGCCAGTTGTGCCAGCACCATTTGTT
GAAAACGCTGTCTTTTTTTACTGGATGAATTTTAGCTCCCTTTTCAAAGA
TCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTC
CATTGGTCTACTTGTCTGTAGCTATACCAGTACCACGCAGTTTTTATCAC
AATTGCTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGG
TTCTTTTATCATTGAGAAGAATTTTTGTTATC
NNCCACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATATATATATATATATA
TATATATATATATATATATATATATATATATTAAATTATTTGGCAGAATT
GTTGTAGGGATATCATCTACTTTGATGTAAGTGTATAGAATCTGGTAGAT
GTGAAGTGTTTTCACAGGACCTGGGTTCTTACAGAGGCTTTATTTATCTT
TTACTAAAACAATTTGATACACTGAATGTCCTAGTTTAGATTCTCCTAGA
GTAGACGTGGAGATAAGTAAATTTTGTTTTCATATTACATATAGGTCATT
TGAAGTCATGGGACAAGATAGTTCCCATAGATTTAAACAGAGTGAATGGA
CAGAAAACAACCGAGCAGCCTGGCCGAAAAGTTGCTAGTTTGGAACTGTT
CTTTGTTATGTTGAAATTATATTTCAATGTAGTAGCTATGGAACATGGCA
TGTACTTTGTTCCCTCCAAAGAAGGAATTATGACATTCATGCTTAGGTTT
TAATTGGGCAGTATAAATACATGAAAGGTAAAGATATTTTTGTTGTTTTC
TATTGATATTCATTCCATCTAACAAGTTCCAGAAATGCATTACTTAGGGA
GAATTTTTTTTTGAATGAACATATACTGATATATTGCTAGTATCCTACAG
AACTTTCCAGAAATATCCGATAGCATTTTACTGTAAAAGACCTACATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_i14.g1 MSMg01no495_i14.g1 CHROMAT_FILE:
MSMg01no495_i14.g1 PHD_FILE: MSMg01no495_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:38 2005
         (536 letters)



>mm_chr4_92264090_92265025
          Length = 936

 Score =  922 bits (477), Expect = 0.0
 Identities = 495/501 (98%)
 Strand = Plus / Plus

                                                                       
Query: 36  atatatatatatatattaaattatttggcagaattgttgtagggatatcatctactttga 95
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 236 atatatatatatatattaaattatttggcagaattgttgtagggatatcagctactttga 295

                                                                       
Query: 96  tgtaagtgtatagaatctggtagatgtgaagtgttttcacaggacctgggttcttacaga 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgtaagtgtatagaatctggtagatgtgaagtgttttcacaggacctgggttcttacaga 355

                                                                       
Query: 156 ggctttatttatcttttactaaaacaatttgatacactgaatgtcctagtttagattctc 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggctttatttatcttttactaaaacaatttgatacactgaatgtcctagtttagattctc 415

                                                                       
Query: 216 ctagagtagacgtggagataagtaaattttgttttcatattacatataggtcatttgaag 275
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 416 ctagagtagacgtggagataagtaaatattgctttcatattacatataggtcatttgaag 475

                                                                       
Query: 276 tcatgggacaagatagttcccatagatttaaacagagtgaatggacagaaaacaaccgag 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tcatgggacaagatagttcccatagatttaaacagagtgaatggacagaaaacaaccgag 535

                                                                       
Query: 336 cagcctggccgaaaagttgctagtttggaactgttctttgttatgttgaaattatatttc 395
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cagcctggttgaaaagttgctagtttggaactgttctttgttatgttgaaattatatttc 595

                                                                       
Query: 396 aatgtagtagctatggaacatggcatgtactttgttccctccaaagaaggaattatgaca 455
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 596 aatgtagtagctatggaacatggcatgtactttgttccgtccaaagaaggaattatgaca 655

                                                                       
Query: 456 ttcatgcttaggttttaattgggcagtataaatacatgaaaggtaaagatatttttgttg 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ttcatgcttaggttttaattgggcagtataaatacatgaaaggtaaagatatttttgttg 715

                                
Query: 516 ttttctattgatattcattcc 536
           |||||||||||||||||||||
Sbjct: 716 ttttctattgatattcattcc 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)