| Query= MSMg01no495_j19.g1 MSMg01no495_j19.g1 CHROMAT_FILE:
MSMg01no495_j19.g1 PHD_FILE: MSMg01no495_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:43 2005
(674 letters)
>mm_chr4_146957808_146958880
Length = 1073
Score = 745 bits (385), Expect = 0.0
Identities = 609/705 (86%), Gaps = 47/705 (6%)
Strand = Plus / Plus
Query: 5 aggagagaaaccctacaaatgtagtgaatgtgacaaatcctttact-gaaaatggctgtt 63
|||||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||| ||
Sbjct: 181 aggagagaaaccttacaaatgtagtgaatgtgacaaatgctttactggaaaa-ggcagtc 239
Query: 64 tgagaattcatcagagaattcatacaggagagaaaccttacaaatgcactgaatgtgaca 123
||||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||||
Sbjct: 240 tgagaattcatcagagaattcatacaggagagagacctcacaaatgtagtgaatgtgaca 299
Query: 124 aatgctttactttcaaaggcagtctgaggattcatcagagaattcatacaggagagaaac 183
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 300 aatgctttactggaaaaggcagtctgagaattcatcagagaatgcatacaggagagaaac 359
Query: 184 cttacaaatgcactgaatgtgacaaatcctttactgaaaagggca----aactgaga-at 238
||||||| || | |||||||||||||| |||||| |||| | | || | | ||
Sbjct: 360 cttacaagtgtagtgaatgtgacaaatgctttacccaaaa----atcccatctta-atat 414
Query: 239 tcatcagagaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaatgctt 298
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 415 tcatcagggaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgctt 474
Query: 299 ta--------------ctgaataaggacatcagagaattcatacaggagagataccttac 344
|| || | ||| ||||||| ||||||||||||||||| |||||||
Sbjct: 475 tacccacaaatcccatcttattaa--tcatcagaaaattcatacaggagagaaaccttac 532
Query: 345 aaatagtttgtatgtgacaaatacaat----acaatgtcagtctgagaaatcat-cagtt 399
||||||||| |||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct: 533 aaatagtttacatgtgacaaatacaatactcacaatgtcagtctgagaaatcatgaattt 592
Query: 400 tttaatacagtagagaatatttataaatgaagtgaacgagacaatcctttaccaagatat 459
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tttcatacagtagagaatatttataaatgaagtgaacgagacaatcctttaccaagatat 652
Query: 460 atcatcttaaaaatcattagagaatacttacagaagagaaacttttcaattatattgaag 519
|||||||||||| ||||||||||||| ||| |||||| ||||||||||| ||||||| ||
Sbjct: 653 atcatcttaaaattcattagagaatagttagagaagacaaacttttcaaatatattgtag 712
Query: 520 gtatgaatcctttactctt---------ggcctatttcctagaatgttaacagtgaatac 570
||||||||||||| | || ||||||||||||||| ||| ||||||||||||
Sbjct: 713 gtatgaatccttt--tttttttttttttggcctatttcctagactgt-aacagtgaatac 769
Query: 571 ttacaggatacaaacttaactcatgcattgtatgaagaaatatttttgacttcatttcag 630
||||||| || |||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 770 ttacaggctagaaacttaactcatgcattgtatgaagaaatatctttgacttcacttcag 829
Query: 631 g-tcaaagagaatatctaataactttttaggggaaagtatttctg 674
| | | |||||| |||||| |||||||||||| ||||||||||||
Sbjct: 830 gat-agagagaacatctaagaactttttagggtaaagtatttctg 873
Score = 317 bits (164), Expect = 2e-90
Identities = 290/348 (83%), Gaps = 38/348 (10%)
Strand = Plus / Plus
Query: 77 gagaattcatacaggagagaaaccttacaaatgcactgaatgtgacaaatgctttac--- 133
||||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gagaattcacaccggagagaaaccttacaaatgcagtgaatgtgacaaatgctttacccg 60
Query: 134 ---tttcaaaggcagtc-tgaggattcatcagagaattcatacaggagagaaaccttaca 189
||| || || || | |||||||| ||||||||||||||||||||||||||||
Sbjct: 61 aaaattc-----ca-tcttg-gtattcatcatagaattcatacaggagagaaaccttaca 113
Query: 190 aatgcactgaatgtgacaaatcctttactg-aaaagggcaaactgagaattcatcagaga 248
|||||| |||||||||||||| |||||||| |||||| || ||||||||||||||||||
Sbjct: 114 aatgcagtgaatgtgacaaatgctttactggaaaagg-cagtctgagaattcatcagaga 172
Query: 249 attcatacaggagagaaaccttacaaatgtagtgaatgtgacaaatgctttactg-aata 307
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 173 attcatataggagagaaaccttacaaatgtagtgaatgtgacaaatgctttactggaa-a 231
Query: 308 agg-a-----------catcagagaattcatacaggagagataccttacaaat--agttt 353
||| | ||||||||||||||||||||||||| |||| |||||| |||
Sbjct: 232 aggcagtctgagaattcatcagagaattcatacaggagagagacctcacaaatgtagt-- 289
Query: 354 gtatgtgacaaatacaatac----aatgtcagtctgagaaatcatcag 397
| ||||||||||| | ||| || | ||||||||||| |||||||
Sbjct: 290 gaatgtgacaaatgctttactggaaaaggcagtctgagaattcatcag 337
Score = 97.4 bits (50), Expect = 3e-24
Identities = 95/114 (83%), Gaps = 12/114 (10%)
Strand = Plus / Plus
Query: 1 atacaggagagaaaccctacaaatgtagtgaatgtgacaaatcctttactga-aaatggc 59
|||||||||||||||| |||||||| |||||||||||||||| |||||| | |||| |
Sbjct: 429 atacaggagagaaaccttacaaatgcagtgaatgtgacaaatgctttacccacaaat--c 486
Query: 60 ---tgt--ttgagaattcatcagagaattcatacaggagagaaaccttacaaat 108
| | || || |||||||| |||||||||||||||||||||||||||||
Sbjct: 487 ccatcttatt---aa-tcatcagaaaattcatacaggagagaaaccttacaaat 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 4
Length of query: 674
Length of database: 1073
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1063
Effective search space: 705832
Effective search space used: 705832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
