Query= MSMg01no495_o21.b1 MSMg01no495_o21.b1 CHROMAT_FILE:
MSMg01no495_o21.b1 PHD_FILE: MSMg01no495_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:06 2005
(512 letters)
>mm_chr4_104309690_104310601
Length = 912
Score = 920 bits (476), Expect = 0.0
Identities = 500/508 (98%)
Strand = Plus / Plus
Query: 5 gaattctttgacctttctcactccctttgcattggtaacaaagggtataagattgcaaag 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgaccattctcactccctttgcattggtaacaaagggtataagattgcaaag 264
Query: 65 agaagcctggactcaaggctgcactggtctaggcaggtccaagagcaggctttcagaccc 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaagcctagactcaaggctgcactggtctaggcaggtccaagagcaggctttcagaccc 324
Query: 125 aacgtatagttggcacatcctaacacggaacacaagctcatagtccaaatccattatgat 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 aacgtatagttggcacatcctaacacggaacacaagctcatagtccaaatccatcatgat 384
Query: 185 acctgtgtttgtaaaagtgaaaaataagcatttactttttaaactaaaagaataatatgt 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 acctgtgtttgtaaaagtgaaaaataagcatttacattttaaactaaaagaataatatgt 444
Query: 245 ataaattatttcatgaacagcaaattcccatgcccacaagtatggacatattacaacatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataaattatttcatgaacagcaaattcccatgcccacaagtatggacatattacaacatg 504
Query: 305 atcacacctgttcatttacatatggtctgtggctatagctgacctcttctgcagaggcag 364
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 505 atcacacctgttcatttacatatggtctgtgactatagctgacgtcttctgcagaggcag 564
Query: 365 tatgttcacaaagctgaaagcatttaacaaatggccctgcacagaaaaagtttgccaacc 424
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 tatgttcacaaagctgaaagcatttaacatctggccctgcacagaaaaagtttgccaacc 624
Query: 425 ctgatctagaacttttaaagttaatattatttatttgtattccagcatcttcatctaaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgatctagaacttttaaagttaatattatttatttgtattccagcatcttcatctaaga 684
Query: 485 aagatagtcagtggttgttccatcccat 512
||||||||||||||||||||||||||||
Sbjct: 685 aagatagtcagtggttgttccatcccat 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_o21.g1 MSMg01no495_o21.g1 CHROMAT_FILE:
MSMg01no495_o21.g1 PHD_FILE: MSMg01no495_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:06 2005
(488 letters)
>mm_chr4_104462342_104463228
Length = 887
Score = 826 bits (427), Expect = 0.0
Identities = 465/487 (95%), Gaps = 17/487 (3%)
Strand = Plus / Minus
Query: 1 ataatggagcatgaggcttctagacttcagcttgtaatgtgccacttcaaggacagagcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ataatggagcatgaggcttctagacttcagcttgtaatgtgccacttcaaggacagagcg 760
Query: 61 cgcgtggagaaacttgctttgctagatgaaataccaacatggaattaaaaaaacaaacaa 120
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cgcgtggaggaacttgctttgctagatgaaataccaacatggaattaaaaaaaca----- 705
Query: 121 acaaacaaacaaacaaacaaacaaacaaaaaacccagacctttacagttagcagctgcga 180
||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 704 ----------aaa-aaacaaacaaacaaaaaacccagacctttatagttagcagctgcga 656
Query: 181 gaaggaaggtgaactttgtatccgctgtttttgcctggggtcatcacacttatgattcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaaggaaggtgaactttgtatccgctgtttttgcctggggtcatcacacttatgattcct 596
Query: 241 tcaggatatctgagggaagatttcagttctcataaatattccagtatcctttttagcttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tcaggatatctgagggaagatttcagttctcataaatattccagtatcctttttagcttg 536
Query: 301 gatgagcactgctattgttactggagcaaacatggacagcgaaggagaatcagaaatctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gatgagcactgctattgttactggagcaaacatggacagcgaaggagaatcagaaatctg 476
Query: 361 cactacaggatgaatataacaactagaggccactcagatgggggcagaatttgctaactt 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cactacaggatgaatataaccactagaggccactcagatgggggcagaatttgctaactt 416
Query: 421 gcaagccttcaccatttgcctatgtcttttgtaaacaaaaccctaaacagttcaagtcac 480
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 415 gcaaaccttcaccatttgcctatgtcttttgtaaacaaaaccc-aaacagttcaagtcac 357
Query: 481 aacatgg 487
|| ||||
Sbjct: 356 aaaatgg 350
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 887
Length adjustment: 10
Effective length of query: 478
Effective length of database: 877
Effective search space: 419206
Effective search space used: 419206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
