TTGGGGGGATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTATTACCTGAGGATAACCTTGAGTTCCTAACTCTTC
TGGCTCCACCTCCCTAGTGCTGAGATTACAGGTGTATGCCACCACGGCCA
GTTTGTGTAGTTCTAGTGATGCAACTCAGAGTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCCTTCTTTCT
TTCATTTTAAAGATTTATTTATTTATTTATTTAATGTATGTGAATACACT
GTAGCTGTCTTCAGACACACCAGAAGATGGCATCGGATCCCCATTGTAGA
TGGTTGTGAGCCACCATGTGGTTGTTGGGAATTGAACTCAGGACCTCTGG
AAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCACTCCAGCCCAGCAAC
GCAGAGTTTCATGCATGCTAGACAAGTCCATCCTGACAATATATAAAAGA
ATGAGCATGGTTGAATGCTAATAAAACTTTATTTACAAAAACAAGTGGCT
GGGCTGCAGGCTATAGATTACCAATCCTTGCAGGCTATATCAACTAATGT
AGGACATTCATGTAAAATTTCTAAAAATCCTGATAACTGGATTTTATCAG
GATTACTAAGATGATAAAAACCACCAATTGTCTGAGATAAATGTATAATG
ACTCATGAATCATGTACAGTTGGGCTTTATTAATTGTGCAGAGATCN

NNNNNNNCCGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGGCAAACAGGAGG
GAAGGAGACAAGTTGTGGATGTGCAGAGAGGACGTCTTCCTACTCCTGGC
TGCCCTGCAGAGTGCTTTCTCAGCTCTCTGACTGTCACTCTCTCACTGTC
ATCATATCTGTCTTCAGAGACTGGGCCAGCTGTGAGCAGCAAGTGGCAAA
TGTGTTCTGGTTCTGAACAGCCCTCATACCTGACCCATCTTACCAACCGA
TGCCGTCTTTGAATCCCTTTTGCATTTATCCACATTGGGCCAAGTGACCC
TCCTGTTCCCACCTGGCTCAGAGATTAACTTTAAAGAGCCAACATACAAA
GACTCTCCTGGAGAGGTCCTGCCGGGCTACTCTTCAACCCTGTGGAGCCG
AGTGACGCTTCCCGGTACCCTGCAGCCCAGAGCCCACTCACCACGTGGTG
TAACACGCCAGGGATTTGGAGCTGTGGGAAGAGGAGTTGGCTTCTTTTAG
GAAGGATGGCAGGAGCGACCTCATCAGTCATCCCTGACAGCAGACAGACA
TTTCAGTTGCTATTTCTAGGAGCTAACACACCTACATCACCATGACAGTG
ACTTGAGGGTAGGGAAGCCAGGCACAGGAGCTGGGGAGGGGCAGGACAGA
GCAGAGGGCCAGCACTGGAGCTGACTGCTCTGGCAAGTGGAAGN

Query= MSMg01no496_i14.g1 MSMg01no496_i14.g1 CHROMAT_FILE:
MSMg01no496_i14.g1 PHD_FILE: MSMg01no496_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:54 2005
         (607 letters)



>mm_chr4_45471028_45472034
          Length = 1007

 Score = 1021 bits (528), Expect = 0.0
 Identities = 593/622 (95%), Gaps = 18/622 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcaggcaaacaggagggaaggagacaagttgtggatgtgcagagaggacgtcttcctac 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 189 tgcaggcaaacaggagggaaggagacaagttgtggatgtgcaaagaggacgtcttcctac 248

                                                                       
Query: 61  tcctggctgccctgcagagtgctttctcagctctctgactgt------------cactct 108
           ||||||||||||||||||||||||||||||||||||||||||            ||||||
Sbjct: 249 tcctggctgccctgcagagtgctttctcagctctctgactgtaacgtttaacgtcactct 308

                                                                       
Query: 109 ctcactgtcatcatatctgtcttcagagactgggccagctgtgagcagcaagtggcaaat 168
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 309 ctcactgtcatcatatctgtcttcagagattgggccagctgtgagcagcaagtggcaaat 368

                                                                       
Query: 169 gtgttctggttctgaacagccctcatacctgacccatcttaccaaccgatgccgtctttg 228
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 369 gtgttctggttctgaacagccctcgtacctgacccatcttaccaaccgatgccgtctttg 428

                                                                       
Query: 229 aatcccttttgcatttatccacattgggccaagtgaccctcctgttcccacctggctcag 288
           |||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aatcccttttgcacagagccacattgggccaagtgaccctcctgttcccacctggctcag 488

                                                                       
Query: 289 agattaactttaaagagccaacatacaaagactctcctggagaggtcctgccgggctact 348
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 489 agattaactttaaagagccaacatacaa-gactctcctggagaggtcctgccgggctact 547

                                                                       
Query: 349 cttcaaccctgtggagccgagtgacgcttcccggtaccctgcagcccagagcccactcac 408
           ||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 548 cttcaaccctgtggagctgagtgatgcttcctggtaccctgcagcccagagcccactcac 607

                                                                       
Query: 409 c-acgtg-gtgtaacacgccagggatttggagctgtgggaagaggagttggcttctttta 466
           | ||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 608 ccacgagagtgtaacacgccagg-atttggagctgtgggaagaggagttggcttctttta 666

                                                                       
Query: 467 ggaaggatggcaggagcgacctcatcagtcatccctgacagcagacagacatttcagttg 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ggaaggatggcaggagcgacctcatcagtcatccctgacagcagacagacatttcagttg 726

                                                                       
Query: 527 ctatttctaggagctaacacacctacatc-accatgacagtgacttgagggtagggaagc 585
           ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 727 ctatttctaggagctaacacacctacatcgac-atgacagtgacttgagggtagggaagc 785

                                 
Query: 586 caggcacaggagctggggaggg 607
           ||||||||||||||||||||||
Sbjct: 786 caggcacaggagctggggaggg 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)