BAC Information

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BAC

Clone NameMSMg01-496K21
Chromosome4 (Build37)
Map Location 74,547,701 - 74,548,375
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814
Downstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496K21.T7 (MSMg01no496_k21.b1)MSMg01-496K21.TJ (MSMg01no496_k21.g1)
ACCAG573428AG573429
length7571,177
length of high quality
(start - end)		679 (46 - 724)---
definitionCHROMAT_FILE: MSMg01no496_k21.b1 PHD_FILE: MSMg01no496_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:06 2005CHROMAT_FILE: MSMg01no496_k21.g1 PHD_FILE: MSMg01no496_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCTTTGAGTTACTGAGGGGAACAAGAAAATTCTCACCATGCTAGTTT
GTTCTAACCTGTGGGTGGAAAGGAGCAGAATATCACTCGGGATTTGGTAA
GACTTAAGATGCGTGAGCCGTAAGCAATAAAGATTGTGATCTTTGTGTCT
AGTACTGAATTCTATTTTAGTGATAAAATAGTCTAGCTGCAGGTGGCCTA
GAATATTCCATTAGGAGGCTACTCGATGTTGTTTTAAAAGTTTTATCCAT
TGTTTTACAAATGCAAGAAAATACAGTATTAGTGTCTTAGGTAAAGCGAT
ATAGTTTAACTTACTCTCCCCAAAAAAGAAAAATAAAATTATCTTGGAAA
CAGAAGAGGTAAAAGATAGAAGTTAAAACATTTTTAGGGTACATATTATT
TTTAAGAAATGTTTTTCTGAGATGGTGGGACTGAGGCTGTTCTCTGGATG
AAATAATAGAAGATTCCTAATTTCTCATAAAGTAACTATTCTCAAAATCA
TAACCCAGTTTCTATTTTACTGGATCATATCTTAAAGCCTATGTTTGTAT
TGTTTCCTAGGAAGAAATATAAAGAATAAATAAAAAAGCTTTCCAGATGG
TTCCAACTAAAGCTGGCATGAATTTTATGGGCAGAGACTATACTGTTTCT
TGATATGTTTTCATTTGTTAGTACATTAAGGATAATAACTGGTGGTACTG
TTGGCAG

TTTGGAATATAGCACCGAAAAAATTAACAGGTCCGGATGGACCTCTCCCC
ACAAAATGGGGGGTGGGGCGTGAGATTTATTCCCCTTTCTAGCGTGTGGC
TGCTAGACGAAGTAAGGGGGAGGTGGGGGCGTCGTGTTTTGCAAGGCAAG
CAGCCGTCGCCTAACCCAATATTGGCCCGATCTTGTTCCGCCCCGGGCCG
CGGGTCAGGTGACCCCTTTGGTGGTTAGCGGCTGAGACTGGATTCCACCC
GCGTTCTGTTTTCCGCGCGCAGGCGCACGCAATAGTGAGATGAGTTAGAT
AAAATATTATCCCCTACCCGATCACAGGTAAGATAGAAAGAAAAATACAC
GGGCAAGAACAACACACCCCATTAAGCCGCGCGACAAAGACATCGTTAAC
ACTTTCTTTTAATTGCCCAACTACGGCGCTAAAATATAACTATCTTCCAA
CACCCCCCCTACCCTCAAAANGCGGCTCATAAGAAACGTGGGTTAGAGAG
GACTGTGCCTCGCTATAATAACTCCAAAAATATACCTATCTTACATAGAT
AAAAGAATTAGATGTAAGATATAGCACCGCACTACCCTATCATGGAATAT
TACACGCCGATAATAATGAAATTGTCCCCCCGGCGCTGTTATTTCTGTGA
TGACAACGGATGGTGGATGGCATAGCACCACTGCAACGAGGAGCGGGGGC
CCCTGTTACAAACCACGCCGCCCCGGAGCAGTACGCGGGTGTAAGCGAGC
GAGAGGAGAGCGCGGGTCGTGGATTGCCTCGGAGCGCACACGGGATACAC
ACCTGTTAAGTGTAAACACACGAGAGCGTGTTGACGTCGCACCCGATGAA
AGTGACCATGCTGCGTATCGTTATCATTAGTACCGAGGCAGGACGAGGGA
GGGGTAGAGCATAATAGAAATACACGCGCGCGCCGCGAGCGGGTAAGAGG
ATATACGAGGTGAATTTGATCAGGTGCTGCGCGAAGGACAAAAACCGAAG
TTCGGAGTGGAAACACCAACGTGTTATACTGACACATATGCCGCTCTGGA
TACACNACGCCTCTGTTGTTGCGTTGCGTTTGCCTGAAAATCATACCCCG
CATAATTGCGGCCTCGCGCGCTCGCTTCTATAGCGTTTATCCTGCCCGCC
ACCACGTGCGGGCGCGGAATAGATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_k21.b1 MSMg01no496_k21.b1 CHROMAT_FILE:
MSMg01no496_k21.b1 PHD_FILE: MSMg01no496_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:06 2005
         (679 letters)



>mm_chr4_74547497_74548575
          Length = 1079

 Score = 1268 bits (656), Expect = 0.0
 Identities = 671/676 (99%), Gaps = 2/676 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgagttac-tgaggggaacaagaaaattctcaccatgctagtttgttctaac 63
           ||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgaggaaaatgaggggaacaagaaaattctcaccatgctagtttgttctaac 264

                                                                       
Query: 64  ctgtgggtggaaaggagcagaatatcactcgggatttggtaagacttaagatgcgtgagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgtgggtggaaaggagcagaatatcactcgggatttggtaagacttaagatgcgtgagc 324

                                                                       
Query: 124 cgtaagcaataaagattgtgatctttgtgtctagtactgaattctattttagtgataaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtaagcaataaagattgtgatctttgtgtctagtactgaattctattttagtgataaaa 384

                                                                       
Query: 184 tagtctagctgcaggtggcctagaatattccattaggaggctactcgatgttgttttaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtctagctgcaggtggcctagaatattccattaggaggctactcgatgttgttttaaa 444

                                                                       
Query: 244 agttttatccattgttttacaaatgcaagaaaatacagtattagtgtcttaggtaaagcg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agttttatccattgttttacaaatgcaagaaaatacagtattagtgtcttaggtaaagcg 504

                                                                       
Query: 304 atatagtttaacttactctccccaaaaaagaaaaataaaattatcttggaaacagaagag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atatagtttaacttactctccccaaaaaagaaaaataaaattatcttggaaacagaagag 564

                                                                       
Query: 364 gtaaaagatagaagttaaaacatttttagggtacatattatttttaagaaatgtttttct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtaaaagatagaagttaaaacatttttagggtacatattatttttaagaaatgtttttct 624

                                                                       
Query: 424 gagatggtgggactgaggctgttctctggatgaaataatagaagattcctaatttctcat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagatggtgggactgaggctgttctctggatgaaataatagaagattcctaatttctcat 684

                                                                       
Query: 484 aaagtaactattctcaaaatcataacccagtttctattttactggatcatatcttaaagc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaagtaactattctcaaaatcataacccagtttctattttactggatcatatcttaaagc 744

                                                                       
Query: 544 ctatgtttgtattgtttcctaggaagaaatataaagaataaataaaaaagctttccagat 603
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 745 ctatgtttgtattgtttcctaggaagaaatataaagaataaataaaaa-gctttccagat 803

                                                                       
Query: 604 ggttccaactaaagctggcatgaattttatgggcagagactatactgtttcttgatatgt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggttccaactaaagctggcatgaattttatgggcagagactatactgtttcttgatatgt 863

                           
Query: 664 tttcatttgttagtac 679
           ||||||||||||||||
Sbjct: 864 tttcatttgttagtac 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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