BAC Information

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BAC

Clone NameMSMg01-496M02
Chromosome4 (Build37)
Map Location 88,720,897 - 88,721,423
singlet/doubletsinglet
Overlap geneLOC100040617
Upstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1
Downstream geneMtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496M02.T7 (MSMg01no496_m02.b1)MSMg01-496M02.TJ (MSMg01no496_m02.g1)
ACCAG573486AG573487
length740735
length of high quality
(start - end)
528 (74 - 601)410 (326 - 735)
definitionCHROMAT_FILE: MSMg01no496_m02.b1 PHD_FILE: MSMg01no496_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:12 2005CHROMAT_FILE: MSMg01no496_m02.g1 PHD_FILE: MSMg01no496_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGGGAAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAAGTTCCGCAGGACAGGCTAGACACCTGGGAAGAGGG
ATCTGCTGGCGGAATCTTTTTGTCTTCTAGAGAAATCAATCTCTTCTGCT
ATGGCTTCCAACTGACTGAGTGATGTCTACTCCCAACAAGAAGGGTAAAT
TTACTCAAAGTCTACCAATGTAAATATTAGACTCATCTTTCAAAAAAATC
ACCCCCCAAACCCCACTGTAATATTTGTCCAAAAGTTTGGGTAACTGACC
TAGTCAAACTGACACATAAAATTAACTCTCACAGACACACCGCAGGGGGT
GGGGGGGTGTTTTTGTCAGTAGGATCCACTCACGCCCCAGCAGGCACTCC
TTTCTGATAGTCTCCTTTCACAATGCAAAGCTGAGGTGGGAGAGTTAAAA
GTCCCACAGCCAAGCTTTCACAAGAGCCCCGGGTGGATTCTGCATGGCTG
CCTCTATCTGCAGGGGTTCTCTTATTTCACATTCACTTGCCTGTGAATGT
CTCTTAGAAAACCTGAGAGACCCTGCCAAATGAATGTACACACTCATCCG
TTCTTATGGGAATTACATCCAGGAAATCTAGATTAATCCCAAGTCAAAAC
TGCCAATGTAACCAACAGATTCTCTCCTGGGTGTAGACACAAAATCATGT
CTACACCACACAACTGCACTTTTCAAATACCTGCTCTCCC
GAAGTTCGATGAAGTGGGAGGCCTGGNGGTCGCCTGTCTTAATAAGTTAG
GTGAACTATAGAATGCTCCAAGGAATTCCTGATCTTTCCAAGGCTTTTAT
CGTGAAGGTGTGTTGGATTTTGTCAAATGCTTTCTCAGCATCTAATGAGA
TGATCATTTTTTTTTCTTTGAGTTTGTATATATAGTGATTATGTTTATGG
ATTTCCGAATGTTGAACCATCCTTGGATCCCTGGCATGGAACCTACTTGA
TAATGATAGATGATCATTTTGATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTGAGTATTTTTGCATTTTTATTCATAAGGGAAATTGATCTGAAGT
TCTCTTTTTTGTGGTGTCTTTGTGTGGATAAGGTATCAGAGTAATTGTGG
CTTCATAGAATGAGTTGGGTAGAGTACCTTCTGTTTCTATTTTGTGGAAA
AGTTTGAAGAGTATTGCTACTAGGTCTTCTTTGAAGGTCTGATAGAACTC
TGCACTAAACCCATCTGGTCCTGGGTTTTTTTTTTTGTTTGTTTGTTTGT
TTGTTTTTTTGTTTGGTTGAGAGACAGTTAATGACTGTTTCTATTTCTTT
AAGGGATATGGGACTGTTTAGATCATTTTCTGATTCTGATTTAACTTTGG
TACCTGGTATCTGTCTAAAAAAATTGGCCATTTCATCCAGATTTTCCAGT
TTTGTTGAATATAGACTTTTATAGTANGATCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_m02.b1 MSMg01no496_m02.b1 CHROMAT_FILE:
MSMg01no496_m02.b1 PHD_FILE: MSMg01no496_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:12 2005
         (528 letters)



>mm_chr4_88720696_88721623
          Length = 928

 Score =  905 bits (468), Expect = 0.0
 Identities = 514/530 (96%), Gaps = 5/530 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggacaggctagacacctgggaagagggatctgctggcggaatctttttgtcttctagaga 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 202 ggacaggctagacacctgggaagagggatctgcgggcggaatctttttgtcttctagaga 261

                                                                       
Query: 61  aatcaatctcttctgctatggcttccaactgactgagtgatgtctactcccaacaagaag 120
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 262 aatcaatcttttctactatggcttccaactgactgagtgatgtctactcccaacaggaag 321

                                                                       
Query: 121 ggtaaatttactcaaagtctaccaatgtaaatattagactcatctttcaaaaaaatcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggtaaatttactcaaagtctaccaatgtaaatattagactcatctttcaaaaaaatcacc 381

                                                                       
Query: 181 cccc-aaaccccactgtaatatttgtccaaaagtttgggtaactgacctagtcaaactga 239
           |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 382 ccccaaaaacccactgtaatatttgtccaaaactttgggtaactgacctagtcaaactga 441

                                                                       
Query: 240 cacataaaattaactctcacagacacaccgcagggg-gtgggggggtgtttttgtcagta 298
           ||||||||||||||||||||||||||| ||  |||| | ||||||| |||||||||||||
Sbjct: 442 cacataaaattaactctcacagacaca-cg--ggggagggggggggcgtttttgtcagta 498

                                                                       
Query: 299 ggatccactcacgccccagcaggcactcctttctgatagtctcctttcacaatgcaaagc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 499 ggatccactcacgccccagcaggcactcctttctgatagtctcctttcagaatgcaaagc 558

                                                                       
Query: 359 tgaggtgggagagttaaaagtcccacagccaagctttcacaagagccccgggtggattct 418
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 559 tgaggtgggagagttaaaagtcccacagcccagctttcacaagagccccgggtggattct 618

                                                                       
Query: 419 gcatggctgcctctatctgcaggggttctcttatttcacattcacttgcctgtgaatgtc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gcatggctgcctctatctgcaggggttctcttatttcacattcacttgcctgtgaatgtc 678

                                                             
Query: 479 tcttagaaaacctgagagaccctgccaaatgaatgtacacactcatccgt 528
           |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 679 tcttagaaaacctgagagaccctgtcaaatgaatgtacacactcatccgt 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)