BAC Information

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BAC

Clone NameMSMg01-496M03
Chromosome4 (Build37)
Map Location 50,501,952 - 50,502,190
singlet/doubletsinglet
Overlap genenone
Upstream geneBaat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496M03.T7 (MSMg01no496_m03.b1)MSMg01-496M03.TJ (MSMg01no496_m03.g1)
ACCAG573488AG573489
length735758
length of high quality
(start - end)
601 (73 - 673)239 (85 - 323)
definitionCHROMAT_FILE: MSMg01no496_m03.b1 PHD_FILE: MSMg01no496_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:12 2005CHROMAT_FILE: MSMg01no496_m03.g1 PHD_FILE: MSMg01no496_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGAGGAT
CCGCGGAATTCCTGTATTTCTCAAGACTTTTATCATGAATGGGTGTTGGA
TTTTGTCAAATGCTTTCTCCGAATCTAATGAAATGATCATGGGGTCTTTG
AGTTTGTTTATATAGGGAATTACGTTGATGGATTTCCATATATTAAACAA
TCCTTGCATCCCTAGGATGAAGCCAACTTTGTCATGATGGATGATCTTTT
TGATGTGTTCTTGCTTTCGGTTTGTGAGGATTTTATTGAGAATTTTTGCA
TTGATATTCATAAGGAAAATTGGTCTGAAGTTCTCTTTCTTTGTTGGGTC
ATTATGTGGTTTAGGTGTCAGAGTAATTGTGGCTTCATAGAATGAATTGG
GTAGAGTACCTTCTGTTTCTATTTTCTGGAATAGTTTTAGGAGAGTTGGA
ATTAGGTCTTCTTTGAAAGTCTAATAGAACTCTGCACTAAACCCATCTGG
TCCTGGGCTTTTTTTGGTTGGGAGACTATTAATGACTGCTTCTATTTCTT
TCGGGGAAATGGGACTGTTTAGATCATTAATCTGATCCTGATTTAACTTT
GTTACCTGGTGTCTGTCTAGGAAGTTGTCTATTTCATCCAGGTTTTCCAG
TTTTGAGTATAGTCTTTTGTATTAGTAATGATGATGGTTTGGATTTCCTC
AGTTTCTGTTGGTATGTCTCCTTTTTCCTTTCTGA
ATGATGTCAATGGCAGTGGGTAGGCCTGGGAGGAGGCTGTTCTAAAAGAG
TTTNGGGTGAACTATATATCTCTCCGCGGAGATCATTTGTGTAACTTCCC
TGTAGTATTGGGAATACATTGCTTTATATTAGTCCTCTGCTAAGTCTGAC
TCTTACGATTTTTCTACCTCTTTTCTGTTTTAAGTCTCAAATTTTAGTTA
AAGGAAGTTTATACAAATATTCTATTATAGGCTCATCACTCTTCAGTATC
CTACTCTATTCATGTTGAAAAGTTGTGAGTCTGTATAAATTACTACCCAC
TGACAAAAGACTTCCTAGATGAGAATTGTTAGCTGAATTACTATGTTCAG
GTAAGATCAGTATTTAGGAAATAGTTTAAATTTTCTTATATTTTCTTCTA
TTTGTTTTACACATTGAGACGCACACATATCTACTACTGTTGTTAAATTA
AATTACACAGTGTATATATCTGCTTTCTAAATACCGATATATACCCATAG
ATAAACGGTATCCCCAGTCGAATGAGATAAATATGTCTTTCTCTTGTAAC
ATATTGAATACAGAGATACACGTCTTTTTAGAGTACCGATGATAAGTGTT
CATCTCTCCACCCAATTTTTTTATCACCCTTGTTTACGGTCCAGGCGTTA
TTACCAAAAGAAGGTGCATCAAAGGAATGGCTTGAGTACAAATTGTTAAT
AATGCGCAAATGGTTCCCCCCCATTATCATTGGTCTCCTGCCCTTTTATC
AATATTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_m03.g1 MSMg01no496_m03.g1 CHROMAT_FILE:
MSMg01no496_m03.g1 PHD_FILE: MSMg01no496_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:12 2005
         (239 letters)



>mm_chr4_50501752_50502390
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgtgtaacttccctgtagtattgggaatacattgctttatattagtcctctgctaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 439 atttgtgtaacttccctgtagtattgggaatacattgctttatattagtcctctgctaac 380

                                                                       
Query: 61  tctgactcttacgatttttctacctcttttctgttttaagtctcaaattttagttaaagg 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tctgactcttatgatttttctacctcttttctgttttaagtctcaaattttagttaaagg 320

                                                                       
Query: 121 aagtttatacaaatattctattataggctcatcactcttcagtatcctactctattcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aagtttatacaaatattctattataggctcatcactcttcagtatcctactctattcatg 260

                                                                      
Query: 181 ttgaaaagttgtgagtctgtataaattactacccactgacaaaagacttcctagatgag 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 259 ttgaaaagttgtgagtctgtataaattactacccactgacaaaagacttcctggatgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)