MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-496P19
Chromosome	4 (Build37)
Map Location	150,323,313 - 150,323,945
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882, Eno1, LOC666880, LOC384091, Rere, Slc45a1, LOC677027, Errfi1, Park7, Tnfrsf9
Downstream gene	Uts2, Per3, Vamp3, Camta1, LOC100041960, Dnajc11
Link	Open Mouse BAC browser

Click to get alignment info.

name	Spsb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74646 MGI:1921896
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	H6pd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100198 MGI:2140356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpr157 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269604 MGI:2442046
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc2a5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56485 MGI:1928369
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC435818 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435818
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins

name	Car6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12353 MGI:1333786
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041882 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041882
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 222 ESTs, 6 Proteins pseudo : _no_value

name	Eno1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13806 MGI:95393
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666880 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666880
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC384091 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384091
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 24 ESTs, 2 Proteins

name	Rere (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68703 MGI:2683486
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 244 ESTs, 4 Proteins

name	Slc45a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242773 MGI:2653235
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC677027 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:677027
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 65 ESTs, 7 Proteins pseudo : _no_value

name	Errfi1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74155 MGI:1921405
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Park7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57320 MGI:2135637
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnfrsf9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21942 MGI:1101059
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Uts2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24111 MGI:1346329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Per3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18628 MGI:1277134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vamp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22319 MGI:1321389
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Camta1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100072 MGI:2140230
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041960 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041960
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Dnajc11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230935 MGI:2443386
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spsb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31541968 GeneID:74646 MGI:1921896
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splA/ryanodine receptor domain and SOCS box containing 1 transcript_id : NM_029035.2

name	H6pd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382659 GeneID:100198 MGI:2140356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) transcript_id : NM_173371.3

name	Gpr157 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110815862 GeneID:269604 MGI:2442046
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 157 transcript_id : NM_177366.3

name	Slc2a5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801986 GeneID:56485 MGI:1928369
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 2 (facilitated glucose transporter), member 5 transcript_id : NM_019741.3

name	LOC435818 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253359 GeneID:435818
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins product : novel member of the solute carrier family 2 (facilitated glucose transporter) Slc2 family transcript_id : XM_001480126.1

name	Car6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753269 GeneID:12353 MGI:1333786
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbonic anhydrase 6 transcript_id : NM_009802.1

name	Eno1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12963490 GeneID:13806 MGI:95393
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : enolase 1, alpha non-neuron transcript_id : NM_023119.1

name	LOC666880 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253328 GeneID:666880
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : similar to Y59A8B.19 transcript_id : XM_986762.2

name	LOC384091 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94372794 GeneID:384091
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 24 ESTs, 2 Proteins product : similar to Snrpf protein transcript_id : XM_357414.2

name	Rere (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372852 GeneID:68703 MGI:2683486
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 244 ESTs, 4 Proteins product : arginine glutamic acid dipeptide (RE) repeats, transcript variant 1 transcript_id : XM_204015.5

name	Slc45a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75709221 GeneID:242773 MGI:2653235
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 45, member 1 transcript_id : NM_173774.3

name	Errfi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19526961 GeneID:74155 MGI:1921405
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ERBB receptor feedback inhibitor 1 transcript_id : NM_133753.1

name	Park7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10181131 GeneID:57320 MGI:2135637
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Parkinson disease (autosomal recessive, early onset) 7 transcript_id : NM_020569.1

name	Tnfrsf9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117422436 GeneID:21942 MGI:1101059
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor receptor superfamily, member 9 transcript_id : NM_011612.2

name	Tnfrsf9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117422434 GeneID:21942 MGI:1101059
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor receptor superfamily, member 9 transcript_id : NM_001077508.1

name	Tnfrsf9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117422438 GeneID:21942 MGI:1101059
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor receptor superfamily, member 9 transcript_id : NM_001077509.1

name	Uts2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755930 GeneID:24111 MGI:1346329
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : urotensin 2 transcript_id : NM_011910.1

name	Per3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922673 GeneID:18628 MGI:1277134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : period homolog 3 (Drosophila) transcript_id : NM_011067.2

name	Vamp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365904 GeneID:22319 MGI:1321389
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vesicle-associated membrane protein 3 transcript_id : NM_009498.4

name	Camta1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125719158 GeneID:100072 MGI:2140230
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calmodulin binding transcription activator 1 transcript_id : NM_001081557.1

name	LOC100041960 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253331 GeneID:100041960
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100041960 transcript_id : XM_001477272.1

name	Dnajc11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353982 GeneID:230935 MGI:2443386
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DnaJ (Hsp40) homolog, subfamily C, member 11 transcript_id : NM_172704.2

name	H6pd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982147 CCDS:CCDS18967.1 GeneID:100198 MGI:2140356
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005792 - microsome [Evidence IDA] GO_function : GO:0017057 - 6-phosphogluconolactonase activity [Evidence IDA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0047936 - glucose 1-dehydrogenase activity [Evidence IEA]; GO:0004345 - glucose-6-phosphate 1-dehydrogenase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006006 - glucose metabolism [Evidence IEA]; GO:0006098 - pentose-phosphate shunt [Evidence IDA] codon_start : 1 note : glucose-6-phosphate dehydrogenase 1 product : hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) protein_id : NP_775547.2

name	Gpr157 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110815863 GeneID:269604 MGI:2442046
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : novel 7 transmembrane receptor (Secretin family) domain containing protein product : G protein-coupled receptor 157 protein_id : NP_796340.2

name	Slc2a5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543728 CCDS:CCDS18968.1 GeneID:56485 MGI:1928369
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005351 - sugar porter activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : fructose transporter product : solute carrier family 2 (facilitated glucose transporter), member 5 protein_id : NP_062715.2

name	LOC435818 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253360 GeneID:435818
definition	codon_start : 1 product : similar to novel member of the solute carrier family 2 (facilitated glucose transporter) Slc2 family protein_id : XP_001480176.1

name	Car6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753270 GeneID:12353 MGI:1333786
definition	GO_function : GO:0004089 - carbonate dehydratase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006730 - one-carbon compound metabolism [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : carbonic anhydrase 6 protein_id : NP_033932.1

name	Eno1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963491 CCDS:CCDS18971.1 GeneID:13806 MGI:95393
definition	GO_component : GO:0000015 - phosphopyruvate hydratase complex [Evidence IEA] GO_function : GO:0016829 - lyase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004634 - phosphopyruvate hydratase activity [Evidence IDA] GO_process : GO:0006096 - glycolysis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : alpha-enolase; 2-phospho-D-glycerate hydrolase product : enolase 1, alpha non-neuron protein_id : NP_075608.1

name	LOC666880 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253329 GeneID:666880
definition	codon_start : 1 product : hypothetical protein protein_id : XP_991856.2

name	LOC384091 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94372795 GeneID:384091
definition	codon_start : 1 product : similar to Snrpf protein protein_id : XP_357414.2

name	Rere (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82895961 GeneID:68703 MGI:2683486
definition	codon_start : 1 product : arginine glutamic acid dipeptide (RE) repeats isoform 1 protein_id : XP_204015.3

name	Slc45a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75709222 CCDS:CCDS18973.1 GeneID:242773 MGI:2653235
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005351 - sugar porter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : deleted in neuroblastoma 5 protein_id : NP_776135.2

name	Errfi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526962 CCDS:CCDS18974.1 GeneID:74155 MGI:1921405
definition	GO_component : GO:0005829 - cytosol [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0031098 - stress-activated protein kinase signaling pathway [Evidence ISS] codon_start : 1 product : mitogen-inducible gene 6 protein protein_id : NP_598514.1

name	Park7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55741460 CCDS:CCDS18975.1 GeneID:57320 MGI:2135637
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence TAS] GO_process : GO:0008344 - adult locomotory behavior [Evidence IMP]; GO:0008283 - cell proliferation [Evidence TAS]; GO:0051583 - dopamine uptake [Evidence IMP]; GO:0006457 - protein folding [Evidence IEA]; GO:0042542 - response to hydrogen peroxide [Evidence IMP] [Evidence IDA]; GO:0001963 - synaptic transmission, dopaminergic [Evidence IMP] codon_start : 1 note : RNA-binding protein regulatory subunit; RNA binding protein regulatory subunit product : DJ-1 protein protein_id : NP_065594.2

name	Tnfrsf9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117422439 GeneID:21942 MGI:1101059
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA] codon_start : 1 note : isoform 1 precursor is encoded by transcript variant 3 product : tumor necrosis factor receptor superfamily, member 9 isoform 1 precursor protein_id : NP_001070977.1

name	Tnfrsf9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755831 CCDS:CCDS18976.1 GeneID:21942 MGI:1101059
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA] codon_start : 1 note : isoform 1 precursor is encoded by transcript variant 1 product : tumor necrosis factor receptor superfamily, member 9 isoform 1 precursor protein_id : NP_035742.1

name	Tnfrsf9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117422435 GeneID:21942 MGI:1101059
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006952 - defense response [Evidence IEA] codon_start : 1 note : isoform 2 precursor is encoded by transcript variant 2 product : tumor necrosis factor receptor superfamily, member 9 isoform 2 precursor protein_id : NP_001070976.1

name	Uts2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755931 CCDS:CCDS18977.1 GeneID:24111 MGI:1346329
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005179 - hormone activity [Evidence IEA] codon_start : 1 note : urocortin 2; urotensin II product : urotensin 2 protein_id : NP_036040.1

name	Per3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:144922674 CCDS:CCDS18978.1 GeneID:18628 MGI:1277134
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0004871 - signal transducer activity [Evidence IEA]; GO:0000155 - two-component sensor activity [Evidence IEA] GO_process : GO:0007623 - circadian rhythm [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0048511 - rhythmic process [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0000160 - two-component signal transduction system (phosphorelay) [Evidence IEA] codon_start : 1 product : period homolog 3 protein_id : NP_035197.2

name	Vamp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678553 CCDS:CCDS18979.1 GeneID:22319 MGI:1321389
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0045202 - synapse [Evidence IEA]; GO:0019717 - synaptosome [Evidence IEA] GO_process : GO:0017156 - calcium ion-dependent exocytosis [Evidence IMP]; GO:0016192 - vesicle-mediated transport [Evidence IEA] codon_start : 1 note : cellubrevin product : vesicle-associated membrane protein 3 protein_id : NP_033524.1

name	Camta1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125719159 GeneID:100072 MGI:2140230
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : calmodulin binding transcription activator 1 isoform 1 protein_id : NP_001075026.1

name	LOC100041960 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253332 GeneID:100041960
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477322.1

name	Dnajc11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370020 CCDS:CCDS18981.1 GeneID:230935 MGI:2443386
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA] GO_function : GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : DnaJ (Hsp40) homolog, subfamily C, member 11 protein_id : NP_766292.1

name	LOC100041882 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253327 GeneID:100041882
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 222 ESTs, 6 Proteins product : similar to ribosomal protein S2 pseudo : _no_value transcript_id : XR_033085.1

name	LOC677027 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253330 GeneID:677027
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 65 ESTs, 7 Proteins product : similar to Rps15a protein pseudo : _no_value transcript_id : XR_033130.1

clone name	MSMg01-356B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475C11
singlet/doublet	doublet
plural/unique	plural

clone name	B6Ng01-185M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-294F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238G15
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-496P19.T7 (MSMg01no496_p19.b1)	MSMg01-496P19.TJ (MSMg01no496_p19.g1)
ACC	AG573662	AG573663
length	769	752
length of high quality (start - end)	632 (77 - 708)	387 (324 - 710)
definition	CHROMAT_FILE: MSMg01no496_p19.b1 PHD_FILE: MSMg01no496_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:30 2005	CHROMAT_FILE: MSMg01no496_p19.g1 PHD_FILE: MSMg01no496_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:30 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NAAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXGTCGAAGAGGAGC CGCGGAATTCTCTGTTCAACCAAAAATAGGAGGGAACTTTCTCAACCTAA TCAAAGAATTTTACATTTCCTGTATAAAGGAAAAAGAAAAAAAAGAATCG TTGAATGAAGTTCTACCACCTAACTCAAGGGTAAGAAATGAGAGACTGGC CAGGCAGTGGTGGTGGCGCATGACTTTAATCCCAACACTTGGGAGACAGA GGAAGGCAGATCTCTGTGAGTTCAAGGCCAGCCTGATCTACAGAGTGAGT TCTAAGACATCCAGGGGCTACTCTTTTAAACCCTGTCTCAAAAAACAAAA ACAACAACAATAAAGACTAAACAAGGAAGAAACTTCTGTCAGTGTAAACA AACTGATTGCCAATGAAGAGACAGATTTACCTACATGTCATGTGCAATAA CAAGAAAGGCTGCTCAAACAGCAACCAGCCACCTTTCTGCCTCTACAAAC AACCCATTCAAAAGCAACCACAAAGCAAAATTCTTAGAAATAACTCTCAA GGGGGCTGGAGAGAGAGCTCTGTGGTTCAGAGTTTACCCAGATCCTGTCG CCTCTGGGTGCGGGAGCCTCACAGCTACCTGTAAGGCCACCCCAGGGGAT CTGATGCCACCTTTGGGTCTCCAGGGGCACCTGCACTCAGATGCACACGT ACCCAGACAGACATAGGTACATTTTACACATAAGATAACAAATCTCACAT AATGCCAACATTAAATGAG	NNCCCAATGAAGTGGGAGGCCTGGCGGCCGCCTTTCGAAAAAGTGAGGTG ACCTATAGAATGCCCAAAAAATTCTCACAGGCTGACCCACCTCTGACAGT TTCTCTTGTTAGTAACATAAGGATAGTAGCTTGTCACAGTGGGTGAGCCT GGATCAGTGTTAGTATTAACTAAACCCCACTGTTCACAAGGAAAGTCCTT CTTAGAGTCCTTTCTACAGGTTTGCTATGGTGACAGTGTAGCCACATGTA GTCACCGTTGCAGTGTCACACAGAATCACGACTTCCCCCGCTCACTTGTT TATGCCTCCCTTCCTTNCTACTCTTGGATCTTGGTGTCTTAGAATTCTTA TTACTGTGAAGGGACACCATGACCACAGCACACTTAGAAAGGAAGACATT TATTTCGGGCCGCCTCACAGTTCAGAGGTTTAGTCCATTATCATCATGGT GGTGGCATGGCAGGCATGGTGCTGGAGAAGGAGCTGAGAGTTCTACAACT GGATCCAAGGGCAGCAGTGAGAGAGCCTGAGCCTGACCCAACTTGAGCTT CTGGAACCTCAAAGCTTGACCCCAGTGACACACTTCCTCCAATAAGGCCA CACCTCCTAATAATGCTATGCCCTGTGAGCCTGTGGTGGCCGTTTTCCTT CAACTATCATACTTGGCAACCTTGGATACTTCAGTCTCCACAGTTTTGGC CTTTTTCCAGAACATCATAGAGTTAGGCCTACATTATAGACTTCTCAGAT CT
quality values	Open. Hide. 0 3 6 6 8 8 9 9 9 9 9 15 17 28 36 34 33 25 25 13 13 22 23 17 9 9 9 21 21 41 28 20 20 14 13 6 6 6 6 6 6 11 13 14 12 14 15 12 11 11 15 16 33 34 31 31 31 31 33 30 27 21 10 8 8 8 7 9 9 10 9 8 8 8 8 13 14 22 28 41 59 59 50 53 53 53 53 57 57 59 42 37 37 40 40 50 59 59 57 47 47 47 47 47 51 51 51 50 50 50 51 51 50 50 50 50 50 59 57 57 59 57 54 54 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 57 57 52 52 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 68 68 57 44 42 42 42 42 35 41 42 47 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 57 57 57 57 57 57 57 57 57 48 48 48 57 57 53 53 50 50 50 59 41 30 25 19 16 11 11 9 8 6 6 8 8 19 34 41 42 50 50 50 53 53 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 57 57 57 59 54 54 54 54 57 48 48 43 43 43 48 48 68 68 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 41 41 20 20 20 32 32 50 50 54 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 59 59 57 57 57 57 57 57 57 68 68 68 68 68 59 68 59 59 47 41 41 59 59 59 68 68 68 68 59 57 57 57 57 57 57 59 68 68 59 59 59 59 59 57 57 48 48 48 59 54 54 54 59 59 68 68 57 57 57 57 46 57 39 47 35 39 39 43 43 48 48 48 48 43 43 43 43 41 59 59 47 47 44 44 37 37 41 41 41 41 46 59 59 40 43 43 43 43 46 43 43 57 57 48 48 48 48 47 59 41 47 43 59 59 47 41 39 35 31 28 28 28 37 37 41 43 41 38 31 31 26 26 22 22 22 34 36 41 41 36 31 26 32 26 29 32 39 39 31 31 31 39 36 35 31 26 30 27 26 26 26 27 25 24 22 29 26 24 17 17 21 26 19 23 20 32 28 28 28 30 28 31 37 37 39 27 28 18 17 17 17 19 18 26 15 14 12 12 14 10 9 9 9 14 19 26 19 23 11 10 11 11 12 12 10 10 10 10 10 11 9 12 8 8 8 8 12 16 11 8 8 8 8 11 12 14 14 11 11 11 12 12 16 16 16 9 9 9 10 12 10 10 10	Open. Hide. 0 0 3 6 6 11 12 13 10 10 9 9 19 19 21 10 9 9 9 19 29 23 25 42 50 50 37 37 37 27 19 8 6 7 8 6 6 6 14 16 6 6 6 6 6 6 11 27 25 22 11 11 12 26 21 27 27 9 9 9 9 9 9 9 13 10 13 11 10 13 13 15 22 23 26 29 30 30 35 35 36 59 53 53 53 50 50 50 50 50 53 57 57 57 47 47 47 47 50 51 68 68 68 68 68 68 68 68 68 68 44 35 28 24 24 28 33 32 37 35 35 37 48 48 50 50 59 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 59 59 57 57 68 68 68 68 46 46 46 46 46 46 57 68 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 57 57 57 57 53 50 53 50 50 57 57 59 59 59 59 59 59 47 34 34 18 23 12 11 11 11 23 25 39 41 46 47 48 50 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 41 34 19 18 11 3 0 3 9 9 9 9 10 10 21 27 47 50 50 50 50 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 68 68 59 59 59 59 48 43 43 39 43 44 57 57 68 57 54 57 57 50 50 50 57 57 57 68 68 68 68 68 68 68 68 68 59 59 59 54 59 59 68 59 59 57 43 43 47 57 57 59 59 59 59 59 59 54 54 43 27 14 10 8 8 8 8 10 12 27 32 42 57 44 57 57 57 57 59 59 59 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 57 57 57 57 59 59 59 59 54 54 57 59 59 57 68 57 57 57 57 57 57 59 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 59 59 57 54 54 54 57 57 57 57 57 57 59 48 48 48 59 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 37 37 37 31 31 37 41 41 41 41 59 59 59 41 47 47 47 47 47 48 50 50 48 48 48 48 48 57 48 57 57 48 48 48 48 41 47 47 39 39 39 39 31 25 25 25 39 43 44 47 47 47 46 59 48 48 48 48 48 43 40 40 40 41 41 41 41 37 37 39 43 41 41 41 41 41 31 36 43 41 41 41 41 41 37 41 37 37 41 41 59 59 37 41 37 37 37 30 25 22 34 28 33 32 39 43 46 46 46 46 41 39 39 37 29 29 29 31 28 34 31 31 30 32 35 39 39 39 37 32 32 37 32 34 29 25 31 28 34 34 31 37 37 37 34 24 22 22 20 20 28 27 30 21 18 17 14 19 17 21 24 27 21 21 21 21 26 23 28 22 24 20 15 10 10 10 18 16 10 10 10 11 16 18 15 18 20 21 16 17 18 16 16 11 11 11 12 12 12

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no496_p19.b1 MSMg01no496_p19.b1 CHROMAT_FILE:
MSMg01no496_p19.b1 PHD_FILE: MSMg01no496_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:30 2005
         (632 letters)



>mm_chr4_150322996_150324027
          Length = 1032

 Score = 1135 bits (587), Expect = 0.0
 Identities = 622/637 (97%), Gaps = 9/637 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggagggaactttctcaacctaatcaaagaattttacatttcctgtataaaggaaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 taggagggaactttctcaacctaatcaaagaattttacatttcctgtataaaggaaaaag 891

                                                                       
Query: 61  -aaaaaaaagaatcgttgaatgaagttctaccacctaactcaagggtaagaaatgagaga 119
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 aaaaaaaaagaatcgttgaatgaagttctaccacctaactcaagggtaagaaatgagaga 831

                                                                       
Query: 120 ctggccaggcagtggtggtggcgcatgactttaatcccaacacttgggagacagaggaag 179
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 830 ctggccaggcagtggtggtggcgcatgactttaatcccagcacttgggagacagaggaag 771

                                                                       
Query: 180 gcagatctctgtgagttcaaggccagcctgatctacagagtgagttctaagacatccagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gcagatctctgtgagttcaaggccagcctgatctacagagtgagttctaagacatccagg 711

                                                                       
Query: 240 ggctactctttta---a-accctgtctcaaaaaacaaaaacaacaacaataaagactaaa 295
           |||||| |    |   | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ggctacac----agagagaccctgtctcaaaaaacaaaaacaacaacaataaagactaaa 655

                                                                       
Query: 296 caaggaagaaacttctgtcagtgtaaacaaactgattgccaatgaagagacagatttacc 355
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 654 caaggaagaaacttctgtcagtgtaaacaaactgattgccaacgaagagccagatttacc 595

                                                                       
Query: 356 tacatgtcatgtgcaataacaagaaaggctgctcaaacagcaaccagccacctttctgcc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tacatgtcatgtgcaataacaagaaaggctgctcaaacagcaaccagccacctttctgcc 535

                                                                       
Query: 416 tctacaaacaacccattcaaaagcaaccacaaagcaaaattcttagaaataactctcaag 475
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 534 tctacaaacaacccattcaaaagcaaccacaaggcaaaattcttagaaataactctcaag 475

                                                                       
Query: 476 ggggctggagagagagctctgtggttcagagtttacccagatcctgtcgcctctgggtgc 535
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 474 ggggctggagagagagctctgtggttcagagtttacccagatcctgtagcctctgggtgc 415

                                                                       
Query: 536 gggagcctcacagctacctgtaaggccaccccaggggatctgatgccacctttgggtctc 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gggagcctcacagctacctgtaaggccaccccaggggatctgatgccacctttgggtctc 355

                                                
Query: 596 caggggcacctgcactcagatgcacacgtacccagac 632
           |||||||||||||||||||||||||||||||||||||
Sbjct: 354 caggggcacctgcactcagatgcacacgtacccagac 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information