NACTATATTTCGCCGCAAACGACTACTATTCGAGAGACCGCGGAGGCTTC
TTTCACTCGAGCCCATTTTTAATGGTTATTGGATTTCTGAATCAACTGCT
TAGNTCTTTAAATTGTTAAATTAACGCGAGTGGGGTAGAAGTGGGGGGAC
TTTTCAAATTTTGNTGNCCTTTTTTCTAAAAAAAAAATTTTTTCTTTAAA
AATTTNNTTTTATAAGGGNATTTTTTTTTAAATGGNNNNNNNNNNNNATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNANCNANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNANNNNNNANANAANACCACTACAAATCACATTTTCAATAATATC
AAATATAGATATATTCACTTATACCCAAAATCTATTTTTATTTTANTTTT
NNNTTNNTTNNNTNTTNNTCCANNCACTACCATTTATTTATATAAATTTT
TTTTATTG

NTTTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTAGTTTGTATTTTCTTT
ATTGTTTATAATTTCATTTTCTGGTGTTGAATAGTTTTCCTTCAACTGTT
TGATTGTAAGTTCCTGTATTTTTAAAGGGATATATTCATTCCTTCCACAT
GTCTCTATCATCTTCATAAGATTGTAATTAAAGACAATTTTTTGTGCTTC
AGCTATATTAGACTATCAAGGGCTTGCTCTAAGAGAGCAGGGCTCTGGTG
GGGCCATATTGCCCTCTCTGTTGTTGACTGTGTTCTTATACTGGCTTTTA
ACTATCTGGGTTTTACAGTTACTATAGGCTTAGAGTCTAATTTCTGAGTT
TGCCTTTGTTAAATAAGTGTTTTAAGATTTTTCCCACTTGGTTTCTGTTT
ACTCTCTCTTCTGGTCTAAGTGGACTGGATTTCAGGTGACTAGTGAGTCT
TCAGATCTGGTAGAGTACCTCCCTTAGGGTTTTTATGGCCTGTGTGGCCT
CTTGTGATTTGAGTGCTAAATTTGCCTGTGGAGTCTCTAGTACCAGCATG
GCCTGGGTACCCTGGTACTTGGGTGACCTCCAGGAAAGCAGGTAGAGTTA
TGGGATAGAAAATGGAGTCCAAGAGATAAAGTGTAATTTAAGGCTGTGGG
TGTGCTTTACAGGGACTTGGCATCCAAGAGCTTGGGGCAGA

Query= MSMg01no497_f20.g1 MSMg01no497_f20.g1 CHROMAT_FILE:
MSMg01no497_f20.g1 PHD_FILE: MSMg01no497_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:01 2005
         (566 letters)



>mm_chr4_4399721_4400686
          Length = 966

 Score = 1042 bits (539), Expect = 0.0
 Identities = 557/563 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttagtttgtattttctttattgtttataatttcattttctggtgttgaatagttttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttagtttgtattttctttattgtttataatttcattttctggtgttgaatagttttcc 260

                                                                       
Query: 61  ttcaactgtttgattgtaagttcctgtatttttaaagggatatattcattccttccacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ttcaactgtttgattgtaagttcctgtatttttaaagggatatattcattccttctacat 320

                                                                       
Query: 121 gtctctatcatcttcataagattgtaattaaagacaattttttgtgcttcagctatatta 180
            |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 atctctatcgtcttcataagattggaattaaagacaattttttgtgcttcagctatatta 380

                                                                       
Query: 181 gactatcaagggcttgctctaagagagcagggctctggtggggccatattgccctctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactatcaagggcttgctctaagagagcagggctctggtggggccatattgccctctctg 440

                                                                       
Query: 241 ttgttgactgtgttcttatactggcttttaactatctgggttttacagttactataggct 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 ttgttgactgtgttcttatactggcttttagctatctgggttttacagttactataggct 500

                                                                       
Query: 301 tagagtctaatttctgagtttgcctttgttaaataagtgttttaagatttttcccacttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagagtctaatttctgagtttgcctttgttaaataagtgttttaagatttttcccacttg 560

                                                                       
Query: 361 gtttctgtttactctctcttctggtctaagtggactggatttcaggtgactagtgagtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttctgtttactctctcttctggtctaagtggactggatttcaggtgactagtgagtct 620

                                                                       
Query: 421 tcagatctggtagagtacctcccttagggtttttatggcctgtgtggcctcttgtgattt 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 tcagatctggtagagtacctcccttagggtttttgtggcctgtgtggcctcttgtgattt 680

                                                                       
Query: 481 gagtgctaaatttgcctgtggagtctctagtaccagcatggcctgggtaccctggtactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagtgctaaatttgcctgtggagtctctagtaccagcatggcctgggtaccctggtactt 740

                                  
Query: 541 gggtgacctccaggaaagcaggt 563
           |||||||||||||||||||||||
Sbjct: 741 gggtgacctccaggaaagcaggt 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)