NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCCCTTTACAATCGTCATACTTGGTTTTTGGTTTTTACTT
CTAAGTGGAATTAATAATAATAAAAGTAACAACAACAATCACCACCACTA
CCATCACCATTACCACCTGTCCTTGGACTGGTTATCTTCTCTGCTAAGAG
CTACAGCGTACACACAATAGAATAGGTAGAATTAATGAGTTTTTGTACCA
ATATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT
ATTTATTTTGGTTTCTCAAGACAGGGTTTCTCTGTATAGTCCTGGCTGTC
CTGGAACTCAAATTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCT
GCCTCTGCCACCCGAGTGCTGGGATTAAGGCATGCACCACCAAGCTCTGC
TTTGTACCAATATTTATAACTGAGACTTTTATATATTTAACATGTTTCGT
GTTTACACACAGTCTCATTTAAAACATCAGTAGGCCCACAAAATATACTC
TGCCCCACCCCCTGCTTCAGATACAATGACTTCTCACAATAGAGTGACAT
GTTCATTCTTCCTTAATCCTAGTCCTATACTCTTACATTCAAACCTGCAC
TTGAACCCCTTTAGAAGCCTGCTACTCTTCAGGCAGTAAACTTTATGAAA
TAATGCATTAATTATTTTTTTATATAACAACCACTTTTTCTGTTCTTTCT
CCN

NCCCCGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGGAGATTAATTGGGATTGCA
CTGAATATATGAATTGTTTTTAATAAATTGGATATGTTATCAAAACTAAG
CATGGGCAGTTATTCTGTTTTCTAATGGTTTCCTCAATTTATTTTTTCAG
ATATATAAAGTTTTCATTGTAGAAGTATTGATTTCACGTCCTTAGTTAGG
TTTTAGTCTTTGATATTTTTTTTTTAAGTCTTTTTAATGGGACTGTTTCA
TTGATCTCTTTTTAAGACTGTTATTATTGGCATATAGAATCCACTGATTT
TGTGAGTTGATTTTGGAACTTGCAACAATGTTGGAAATGTTGATCATTAT
CAGAAGTTTTCTGATGGCTCGCAGCCAAATACAGACATGTATATCAATGG
AAAAAATAGAAGACCCTAACATATGTACACAATATAACAACCATCTGGTA
TTTGAAAAAGAAGCCCAAAATACACATGAATGAAGAAGCAGCATGTTTAA
CAGATGTCTTTGGGGGAAACTAAATGTCCTCCTATAGATAAATGAAATTA
AACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAT
ATATATATATATATATATATATATATATATATATATATATATATATATAT
ATATAGCCGNAAAAAAAACCCCAGATATATAGAGTGTCTCAGAAAGAAAT
T

Query= MSMg01no497_h05.b1 MSMg01no497_h05.b1 CHROMAT_FILE:
MSMg01no497_h05.b1 PHD_FILE: MSMg01no497_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:08 2005
         (694 letters)



>mm_chr4_72726020_72727113
          Length = 1094

 Score = 1168 bits (604), Expect = 0.0
 Identities = 665/690 (96%), Gaps = 8/690 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcccctttacaatcgtcatacttggtttttggtttttacttctaagtggaatta 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattctcccctttaaaatcgtcatacttggtttttggtttttacttctaagtggaatta 272

                                                                       
Query: 65  ataataataaaagtaacaacaacaatcaccaccactaccatcaccattaccacctgtcct 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ataataataatagtaacaacaacaatcaccaccactaccatcaccattaccacctgtcct 332

                                                                       
Query: 125 tggactggttatcttctctgctaagagctacagcgtacacacaatagaataggtagaatt 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gggactggttatcttctctgctaagagctacagcgtacacacaatagaataggtagaatt 392

                                                                       
Query: 185 aatgagtttttgtaccaatatttatttatttatttatttatttatttatttatttattta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aatgagtttttgtaccaatatttatttatttatttatttatttatttatttatttattta 452

                                                                       
Query: 245 tttatttatttattttggtttctcaagacagggtttctctgtatagtcctggctgtcctg 304
           |||||||        |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tttattt--------tggtttctcaagacagggtttctctgtatagtcctggctgtcctg 504

                                                                       
Query: 305 gaactcaaattgtagaccaggctggcctcaaactcagaaatccacctgcctctgccaccc 364
           |||||||  ||||||||||||||| |||| |||||||||||||||||||||||||| || 
Sbjct: 505 gaactcactttgtagaccaggctgtcctcgaactcagaaatccacctgcctctgcctcct 564

                                                                       
Query: 365 gagtgctgggattaaggcatgcaccaccaagctctgctttgtaccaatatttataactga 424
           |||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||||||
Sbjct: 565 gagtgctgggattaaggcgtgtgccaccaagctcggctttgtaccaatatttataactga 624

                                                                       
Query: 425 gacttttatatatttaacatgtttcgtgtttacacacagtctcatttaaaacatcagtag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gacttttatatatttaacatgtttcgtgtttacacacagtctcatttaaaacatcagtag 684

                                                                       
Query: 485 gcccacaaaatatactctgccccaccccctgcttcagatacaatgacttctcacaataga 544
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 685 gcccacaaaatatactctgccccaccccctgcttcagatacaataacttctcacaataga 744

                                                                       
Query: 545 gtgacatgttcattcttccttaatcctagtcctatactcttacattcaaacctgcacttg 604
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 745 gtgacatgttcattcttccttaatcctagtcctatactcttacattcagacctgtacttg 804

                                                                       
Query: 605 aacccctttagaagcctgctactcttcaggcagtaaactttatgaaataatgcattaatt 664
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 805 aacccctttagaagcctgctactcgtcaggcagtaaactttatgaaataatgcattaatt 864

                                         
Query: 665 atttttttatataacaaccactttttctgt 694
           ||||||||||||||||||||||||||||||
Sbjct: 865 atttttttatataacaaccactttttctgt 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)