Query= MSMg01no497_o21.b1 MSMg01no497_o21.b1 CHROMAT_FILE:
MSMg01no497_o21.b1 PHD_FILE: MSMg01no497_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:47 2005
(464 letters)
>mm_chr4_43671576_43672438
Length = 863
Score = 835 bits (432), Expect = 0.0
Identities = 456/466 (97%), Gaps = 5/466 (1%)
Strand = Plus / Minus
Query: 1 taggagatcgttggagactttgggcagtggttttacactgccatggggagggaaactcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 taggagatcgttggagactttgggcagtggttttacactgccatggggagggaaactcca 604
Query: 61 aatattcatgaatttgaaagagtcccttcaggaggttgggtaagacgtaaaggaaagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aatattcatgaatttgaaagagtcccttcaggaggttgggtaagacgtaaaggaaagaaa 544
Query: 121 tcagacaacccccaaagtaggctgtagatcaaggtaacaacttaagaaggatcaggggga 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 543 tcagacaacccccaaagtaggctgtagatcaaggtaacaacttaggaaggatcaggggga 484
Query: 181 aaggccatatacaaaaggatcctgaagggtgcagaagaggggagagatgcttggtgagac 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 483 aaggccatatacaaaaggatcctgaagggtgcagaagaggggagaggtgcttggtgagac 424
Query: 241 actatttttt--ggtgtggaagaaagaggatgaggttaaggctctgatgacgagacactt 298
|| || | |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 423 acgatct---caggtgtggaagaaagaggatgaggttaaggctctgatgaagagacactt 367
Query: 299 catttcttaaaacacagaaggaagtgtgagatgcagggagcagggactcctagaagttcc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 catttcttaaaacacagaaggaagtgtgagatgcagggagcagggactcctagaagttcc 307
Query: 359 cttctgatgacatctgcacttcctgggaaagagaattagtgagttagtggacagtgggag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cttctgatgacatctgcacttcctgggaaagagaattagtgagttagtggacagtgggag 247
Query: 419 actggacaagaaaagtgagcagtgggggaggatggtggaaggaatt 464
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 actggacaagaaaagtgagcagtgggggaggatggtggaaggaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_o21.g1 MSMg01no497_o21.g1 CHROMAT_FILE:
MSMg01no497_o21.g1 PHD_FILE: MSMg01no497_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:47 2005
(239 letters)
>mm_chr4_43518573_43519211
Length = 639
Score = 435 bits (225), Expect = e-126
Identities = 234/237 (98%)
Strand = Plus / Plus
Query: 3 ctctttactgtgattattaaccaacccctccccgtggggcttctacctctgcttcaaaga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ctctttactgtgattattaaccaacccctccccgtggggcttctacctctgcttcaaaga 262
Query: 63 tgggaacagattttacccacatccatagttccttgaggcagaattatgacatctgtcctc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgggaacagattttacccacatccatagttccttgaggcagaattatgacatctgtcctc 322
Query: 123 actcgctggagtgagagcttctcagataggagccttcattttcatttccgcatccctagt 182
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 323 actcgctggagcgagagcttctcagataggagccttcgttttcatttccgcatccctagt 382
Query: 183 ccactgcccagtgcctaacataccgtaggtattaaacaaatacggcgtgcaaacatg 239
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccacagcccagtgcctaacataccgtaggtattaaacaaatacggcgtgcaaacatg 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
