BAC Information

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BAC

Clone NameMSMg01-498N03
Chromosome4 (Build37)
Map Location 86,449,863 - 86,450,128
singlet/doubletsinglet
Overlap geneDennd4c
Upstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685
Downstream geneRps6, Asah3l, Slc24a2, Mllt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498N03.T7 (MSMg01no498_n03.b1)MSMg01-498N03.TJ (MSMg01no498_n03.g1)
ACCAG575051AG575052
length763754
length of high quality
(start - end)
271 (52 - 322)243 (78 - 320)
definitionCHROMAT_FILE: MSMg01no498_n03.b1 PHD_FILE: MSMg01no498_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:01 2005CHROMAT_FILE: MSMg01no498_n03.g1 PHD_FILE: MSMg01no498_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGCGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTGATTTCCAGTTAAGTAGCAAACTCAAAGCTAGCCTG
GCTCACATAAGTCTCTAGCTCAAAAGAAAACTTAAACACTAACAAAAAAG
TCTTGCAGATATTATCAAACTATTCTGAAAGACATTAAAGCAAGAAAACA
GCAGACCAGTACCCAAAAATCCATAACTTTTTTTTTTAAGATTTATTTAT
TTATTATATGTAAGTACACTGTAGCTGTAAGTACACTCCAGAAGAGGGCA
TCAGATCTTGTTACGGATGGTTGTTAGCCACCATGTGGTTGCTGGGATTT
GAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTGCTCTTTTTTTTTTTTC
CTTTAAGATTTTTATTTGTTATCATAAATAAGTACACTGTAGCTGCCTTT
AGACACACTAGAAAAGGGCGTCAGATCTCATTACTGCTGGTTGTGAGCCA
CCACGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAACTGTCTGT
GCTCTTAACCGCTGAGCCATCTCTCCAGTACCCATAGCTTTTAAATAAGA
AAACTAATCATATCCTGTTCACTTAGATTAAACCACCTACAACAAACACT
AAGACTTAGGTAAGAAAACATTTTTTTTTTTTGGTTTGGTTTTTTGGTTC
CCCGAGATTGGGCTTCCCCTGGGTAACCCCAGTCTTTTTTTTGATTTCAC
CAGGCAAATTAGA
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCTGAAAAAATTCCACACGTTAATGACCTGTAGGGAC
TTCTGGTTTACTGCTCTATGGATGTAAACAATTCATCCATGGGATGTGGC
GGCTCTGGTCTGTAATCCCCAGCCAGCACTAGGGAAATTGCGGCAGGAGG
ATTGTTGTGAGTTCTAGGCCAGAAAAAATACCGTTCTCAAAGAGAGACAA
CTTATCAAAAGCTTCTAATTAAAAGGTTGATCTGAATTTCCACAAGCAAA
GCTTGAGCCTCTCTTCTGTGTTTTCNTTAGTAAAACAATTCCAAATTGCT
CCTTAGTGATATCAGCCAACAACTAAGGAAGATGGCCAACTTTATCGTGA
CTTATGCAATATTTTTAAGTGGTCTGAATCATTTTTTAATCCTTGTCGAG
AGGGCAGGGACGTGAACTGGGTTATTTGATCTTGAAAGTTGTACAGCCAT
CTGGAGTCATAAGGGTTCAGGGAATTTCTTTCCTGGAAAAAGATACAGGT
GCAGGCCTTCTAGTTCCTTGCAAGGGAAACTATAAGGAACAGTTGAAGAT
AGGAAGGAAGCTCTTGTGCCCTAGCTACATAGATCCCCTGTCACCAGAAT
ATGTAATAAGAGCAACAGCAACAGTGCTGGGCCCTACTAACCGGGGCTTT
GTGGAAAGTGCCTTTGGAGCTATGGAATTTGAACTTCTGGGTCTTCACTC
CCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_n03.b1 MSMg01no498_n03.b1 CHROMAT_FILE:
MSMg01no498_n03.b1 PHD_FILE: MSMg01no498_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:01 2005
         (271 letters)



>mm_chr4_86449737_86450407
          Length = 671

 Score =  466 bits (241), Expect = e-136
 Identities = 261/271 (96%), Gaps = 9/271 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgatttcc--agttaagtagcaaactcaaagctagcctggctcacataagtc 62
           |||||||||||  |||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaattcagtga--tccttagttaagtagcaaactcaaagctagcctggctcacataagtc 335

                                                                       
Query: 63  tctagctcaaaagaaaacttaaacactaacaaaaaagtcttgcagatattatcaaactat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tctagctcaaaagaaaacttaaacactaacaaaaaagtcttgcagatattatcaaactat 275

                                                                       
Query: 123 tctgaaagacattaaagcaagaaaacagcagaccagtacccaaaaatccataactttttt 182
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 274 tctgaaagacattaaagcaagaaaacagcagaccactacccaaaaatccataactttttt 215

                                                                       
Query: 183 ttttaa--gatttatttatttattatatgtaagtacactgtagctgtaagtacactccag 240
           |   ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 t---aaaagatttatttatttattatatgtaagtacactgtagctgtaagtacactccag 158

                                          
Query: 241 aagagggcatcagatcttgttacggatggtt 271
           |||||||||||||||||||||||||||||||
Sbjct: 157 aagagggcatcagatcttgttacggatggtt 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)