Query= MSMg01no499_a11.b1 MSMg01no499_a11.b1 CHROMAT_FILE:
MSMg01no499_a11.b1 PHD_FILE: MSMg01no499_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:19 2005
(559 letters)
>mm_chr4_134950589_134951547
Length = 959
Score = 899 bits (465), Expect = 0.0
Identities = 523/551 (94%), Gaps = 16/551 (2%)
Strand = Plus / Plus
Query: 17 ggctgctcgaaggatcactgctaatgtctctaggaccagacactgcagctggatgaggga 76
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ggctgctcgcaggatcactgctaatgtctctaggaccagacactgcagctggatgaggga 276
Query: 77 ggaacagagaggaatctgcctttgtcctctgggcatccttcaggtctgcagctggaaaga 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ggaacagagaggaatctgcctttgtcctctgggcatccttcaggtctgcagctggaaaga 336
Query: 137 gagctaaggtgtggctcccagaactgagaggactagaggggctggtcttcttgagaagtt 196
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 337 gagctaaggtgtggctcccagaactgagaggactagaggggctggccttctcgagaagtt 396
Query: 197 ccgggtgaaagggtccaccatgcccagtggtaggaagaattttaaaatttctttttttt- 255
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctgggtgaaagggtccaccatgcccagtggtaggaagaattttaaaatttc--------a 448
Query: 256 ------cttgccctaaaaattgtcacagcaggtcctagacacaggtttctccaaaagggg 309
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aggcagcatgccctaaaaattgtcacagcaggtcctagacacaggtttctccaaaagggg 508
Query: 310 gcactgacattattaagtaattgctgctgatcgataaatcagggagtggtagctcagaga 369
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 509 gcactgacattattaagtaattgctgctgatcgataaatcagggagtggtagatcagaga 568
Query: 370 cacgaagtttaagccagatacagacactgggcacagtgtagggtaaagtccctgctggtc 429
||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cacgaggtttaaaccacatgcagacactgggcacagtgtagggtaaagtccctgctggtc 628
Query: 430 ggcccctcctcagttctggcacaaggtcagctgggtttctagatcctcatcattccccaa 489
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gtcccctcctcagttctggcacaaggtcagctgggtttctagatcctcatcattccccaa 688
Query: 490 ggtaccccgttcttacacctcccactctgctgccactgggaccctggcttgggg-tctca 548
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 689 ggtgccccgttcttacacctcccactctgctgccactgggaccctggcttgggggtctca 748
Query: 549 tcagctcaggc 559
|||||||||||
Sbjct: 749 tcagctcaggc 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_a11.g1 MSMg01no499_a11.g1 CHROMAT_FILE:
MSMg01no499_a11.g1 PHD_FILE: MSMg01no499_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:19 2005
(598 letters)
>mm_chr4_135133133_135134130
Length = 998
Score = 1141 bits (590), Expect = 0.0
Identities = 596/598 (99%)
Strand = Plus / Minus
Query: 1 attgaccatctgttgtgctgaaacctggggcaagcgctgggtaaggtttttcttggtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 attgaccatctgttgtgctgaaacctggggcaagcgctgggtaaggtttttcttggtgct 739
Query: 61 attcccacccctctggaagcttacagctccatcaactcctttacacaaaatgtcaaccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 attcccacccctctggaagcttacagctccatcaactcctttacacaaaatgtcaaccaa 679
Query: 121 tttgccaacttccattctgccccaccccgacccccttacctgtgaatccagtatagacca 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttgctaacttccattctgccccaccccgacccccttacctgtgaatccagtatagacca 619
Query: 181 gacagattcaaaggactgtttccgaggctctggaggcaggcagaccaaagtctggttccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gacagattcaaaggactgtttccgaggctctggaggcaggcagaccaaagtctggttccg 559
Query: 241 tcccgactccatggggagagtcttagatgtgacatcacctctctcggcctctgttagatc 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcccgacaccatggggagagtcttagatgtgacatcacctctctcggcctctgttagatc 499
Query: 301 atctagatcatagagatcagttcaaagggcttgagtgtcacgtgcttgagtgacatcaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 atctagatcatagagatcagttcaaagggcttgagtgtcacgtgcttgagtgacatcaag 439
Query: 361 catgagaccactgcctgaccctacagaggccactgtttatcttcctatcaccagataatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 catgagaccactgcctgaccctacagaggccactgtttatcttcctatcaccagataatg 379
Query: 421 agggaacctctgctggaaccagaccttggccacttcccttgactgcagagggcgtggctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agggaacctctgctggaaccagaccttggccacttcccttgactgcagagggcgtggctg 319
Query: 481 tgccccgatcctgttgtcggtggtgttgttggaattaacaggtttttctgagttcacttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgccccgatcctgttgtcggtggtgttgttggaattaacaggtttttctgagttcacttt 259
Query: 541 tagctgggagtggtcaacatctcggtttaaccatccttgattaaatgaggggaaacag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tagctgggagtggtcaacatctcggtttaaccatccttgattaaatgaggggaaacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
