BAC Information

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BAC

Clone NameMSMg01-499D21
Chromosome4 (Build37)
Map Location 64,798,836 - 64,923,355
singlet/doubletdoublet
Overlap genePappa
Upstream genenone
Downstream geneAstn2, Trim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499D21.T7 (MSMg01no499_d21.b1)MSMg01-499D21.TJ (MSMg01no499_d21.g1)
ACCAG575372AG575373
length682749
length of high quality
(start - end)		609 (49 - 657)567 (75 - 641)
definitionCHROMAT_FILE: MSMg01no499_d21.b1 PHD_FILE: MSMg01no499_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:35 2005CHROMAT_FILE: MSMg01no499_d21.g1 PHD_FILE: MSMg01no499_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,798,836 - 64,799,444)(64,922,789 - 64,923,355)
sequence
GACTCACTATAGTCAGAAATCCGCGGAATTCCCAAAATCTTGCACAGTAC
ATGGTCCAACAATTATATTTTAGTAAATACCTACGTAGATACATAATGCA
AATTTACAGAATAGGTAATCTTGTCTCCTCAGCACACAGATTGAAAACTT
GCAATTTTGAAAAGGGAAAGAACTCATCACAACTTCCATTCCATCTTAAA
CACAAAGGAGTAGGTCTCAGTTCCCAAACCCATCTCCCTTTATCTTAGGA
TTGGGACACAACTTGCTCAAATGTAGACTTTAAAACTTTCAGATAGTCAA
GATCTACAGTTAGATAGGACTCCACCTGCCCTTTCATGCCTGGAAAGACT
GAAGTCCAGTGGGAAAATCTATCAGTTCTAAATTCAACAGTGATGCAGTG
ACAACTCTGAGCTGCCTCGAGAAATCTCCGTGTGTCTCTCCAGGTCAACA
AATGCATAGCATATGTTCTATGCTGTAAGATATAGTCATGGATAATACAG
AGTATGTCCCTGCCCTTGTGGACTTTGTATTCTCAGGAGAATTGAAAGGC
AGTAGCCTAGTAAACAGTTGTAACCAATTATAACTTAACTGTGAGAATCA
AGATTAGAAAATACAAATATCAAGCTTTGGGAAATGACTACTACAAAAAA
TACTGGTTAGTANGGTCAAAATGAGGTTTGCA

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAACGGTATATTCAAATTTGAGTTCT
TTCCCATATTTGAATCATAATAAGAAGCCCATAGGAGAATGGTCATCATC
CCCATGACGTTTACACTTCCTCCCCTTCATCACAATATGCCTTATCCTTA
ACCAGTGAGAGTAAAGAGGTGCTATATGACAGTTGGCTAAAGTTTCGCTC
AGGTAGAGATGTTCTGTGACACTGTGCTTGAAGTGGGCACCTTGAGAGCC
ATAACAGGGATATAGGGAACCAGCAACAGGAGCCCTGCAAGGCTAGGAAC
TTACCTGAGATGCCGCTGGCTGCCCAATGACAACCCAACCTGGGCACTGC
TGGTCTTGATGAGATACTGAAGCATTGGATGCCCACTGATCCAGGAAACC
CTGGGGCGTGTAGACACCACAGTCTTTAATGCTAGTTTTTTGTTCAAACT
CTTCACACATCCCATCCCCATCATGGAAATAGCACCGGCTGGGTTCATCT
GTGGGAAATGGACATAGGAAGGGAGTCAATAATTAAATATTTCTTCTCTG
GCATTAACTCTCAGCAGCAGCTGTGGAATAGACCATTCAGACCAGAAGAT
CCGTGGAACCTATGATCTTTAGTCACATTGGGATACTCTTCAGCCTTAAT
GGGAAAAAAATCTAAGAAGTCTTGCCATGCACAATGACTTGTTTGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_d21.b1 MSMg01no499_d21.b1 CHROMAT_FILE:
MSMg01no499_d21.b1 PHD_FILE: MSMg01no499_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:35 2005
         (609 letters)



>mm_chr4_64798636_64799644
          Length = 1009

 Score = 1131 bits (585), Expect = 0.0
 Identities = 603/609 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatggtccaacaattatattttagtaaatacctacgtagatacataatgcaaatttaca 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 acatggtccaacaattatattttagtaaatacctacgtaggtacataatgcaaatttaca 260

                                                                       
Query: 61  gaataggtaatcttgtctcctcagcacacagattgaaaacttgcaattttgaaaagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaataggtaatcttgtctcctcagcacacagattgaaaacttgcaattttgaaaagggaa 320

                                                                       
Query: 121 agaactcatcacaacttccattccatcttaaacacaaaggagtaggtctcagttcccaaa 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 321 agaactcatcacaacttccattccatcttaaacacagaggagtaggtctcagttcccaag 380

                                                                       
Query: 181 cccatctccctttatcttaggattgggacacaacttgctcaaatgtagactttaaaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatctccctttatcttaggattgggacacaacttgctcaaatgtagactttaaaactt 440

                                                                       
Query: 241 tcagatagtcaagatctacagttagataggactccacctgccctttcatgcctggaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagatagtcaagatctacagttagataggactccacctgccctttcatgcctggaaaga 500

                                                                       
Query: 301 ctgaagtccagtgggaaaatctatcagttctaaattcaacagtgatgcagtgacaactct 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 ctgaagtccagtgggaaaatctatcagttctaaattcaaccgtgatgcagtgacaactct 560

                                                                       
Query: 361 gagctgcctcgagaaatctccgtgtgtctctccaggtcaacaaatgcatagcatatgttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagctgcctcgagaaatctccgtgtgtctctccaggtcaacaaatgcatagcatatgttc 620

                                                                       
Query: 421 tatgctgtaagatatagtcatggataatacagagtatgtccctgcccttgtggactttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgctgtaagatatagtcatggataatacagagtatgtccctgcccttgtggactttgt 680

                                                                       
Query: 481 attctcaggagaattgaaaggcagtagcctagtaaacagttgtaaccaattataacttaa 540
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 attctcaggagaattgaaaggcagtagcctagtaaacaattgtaaccaattataacttaa 740

                                                                       
Query: 541 ctgtgagaatcaagattagaaaatacaaatatcaagctttgggaaatgactactacaaaa 600
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 ctgtgagaatcaagattagaaaatacaaataccaagctttgggaaatgactactacaaaa 800

                    
Query: 601 aatactggt 609
           |||||||||
Sbjct: 801 aatactggt 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no499_d21.g1 MSMg01no499_d21.g1 CHROMAT_FILE:
MSMg01no499_d21.g1 PHD_FILE: MSMg01no499_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:35 2005
         (567 letters)



>mm_chr4_64922589_64923555
          Length = 967

 Score = 1089 bits (563), Expect = 0.0
 Identities = 566/567 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacggtatattcaaatttgagttctttcccatatttgaatcataataagaagcccatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 caacggtatattcaaatttgagttctttcccatatttgaatcataataagaagcccatag 708

                                                                       
Query: 61  gagaatggtcatcatccccatgacgtttacacttcctccccttcatcacaatatgcctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gagaatggtcatcatccccatgacgtttacacttcctccccttcatcacaatatgcctta 648

                                                                       
Query: 121 tccttaaccagtgagagtaaagaggtgctatatgacagttggctaaagtttcgctcaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tccttaaccagtgagagtaaagaggtgctatatgacagttggctaaagtttcgctcaggt 588

                                                                       
Query: 181 agagatgttctgtgacactgtgcttgaagtgggcaccttgagagccataacagggatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agagatgttctgtgacactgtgcttgaagtgggcaccttgagagccataacagggatata 528

                                                                       
Query: 241 gggaaccagcaacaggagccctgcaaggctaggaacttacctgagatgccgctggctgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gggaaccagcaacaggagccctgcaaggctaggaacttacctgagatgccgctggctgcc 468

                                                                       
Query: 301 caatgacaacccaacctgggcactgctggtcttgatgagatactgaagcattggatgccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 caatgacaacccaacctgggcactgctggtcttgatgagatactgaagcattggatgccc 408

                                                                       
Query: 361 actgatccaggaaaccctggggcgtgtagacaccacagtctttaatgctagttttttgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 actgatccaggaaaccctggggcgtgtagacaccacagtctttaatgctagttttttgtt 348

                                                                       
Query: 421 caaactcttcacacatcccatccccatcatggaaatagcaccggctgggttcatctgtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 caaactcttcacacatcccatccccatcatggaaatagcaccggctgggttcatctgtgg 288

                                                                       
Query: 481 gaaatggacataggaagggagtcaataattaaatatttcttctctggcattaactctcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaaatggacataggaagggagtcaataattaaatatttcttctctggcattaactctcag 228

                                      
Query: 541 cagcagctgtggaatagaccattcaga 567
           |||||||| ||||||||||||||||||
Sbjct: 227 cagcagctctggaatagaccattcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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