BAC Information

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BAC

Clone NameMSMg01-500C08
Chromosome4 (Build37)
Map Location 10,222,054 - 10,222,657
singlet/doubletsinglet
Overlap genenone
Upstream gene4933402J24Rik, Asph, Gdf6, 4930448K20Rik
Downstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500C08.T7 (MSMg01no500_c08.b1)MSMg01-500C08.TJ (MSMg01no500_c08.g1)
ACCAG576057AG576058
length639665
length of high quality
(start - end)
270 (296 - 565)604 (58 - 661)
definitionCHROMAT_FILE: MSMg01no500_c08.b1 PHD_FILE: MSMg01no500_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:44 2005CHROMAT_FILE: MSMg01no500_c08.g1 PHD_FILE: MSMg01no500_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAATAGGTTCCAAATCCGCNGGATTCCTGATCNTTTCAAACAATTATCA
TGAAGGGGTGTTGGATTTTGTCAAATTCTTTCCCAAATCTAATGAGATAA
TCATATGGTTTTTGCTTTTGAGTTTGTTTATGTAGTGGATTACGTTGATG
GATTTCTGTATATTAAACTATCCCTGCATTCCTGGGATGAAGCCTACTTG
GTCATGATGGATGATCGTTTTGATGTGTTCTTGGATTCGGTTTGCGAGGA
TTTTATTGAGTATGTTTGCATCGATATTCATAAGGTTAACTGGCCTGAAG
TTCTCTTCCTTTGTTGGATCTTTGTGTGGTTTAGGTATCAGAGTAATTGT
GGCTTCATAGAAGGAATTGGGTAGAGTTCCTTCTGTTTCTATTTTGTGGA
ATAGTTTGACAGGAGTTGGAATTAGGTCTTCTTTGAAGGTCTGATAGAAC
TATGCGCTAAACCCATCTGTTCCTGGGCTTTTTTGGTTGGGAGACTATTG
ATGACTGCTTCTATTTCTTTAGGGGAAATGGAACTGTTAAGTCTTACACG
CGTTCGCGACCGGCCATGAAGAATGCATCATACCGGAATCTTCTGCGTGA
AAGCTTTATTGCTTACATCTTCAGGAGCCAGAGAGCAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACATAGAGAACTGGTTCCCATTAATTAAGACCAGTTTCTAAGAC
TGAATCAAAGCTGCCATCTCAAAGGTTTTGAAAGTCAGGATGTAAAATAC
AAGTTACAACCCCAACACCTTCCCCTTATCCATCTCCTTGAGCCATTTCA
GGCCATTGGGTAACATATGACTTGCCCTTAGTCAGTCCTAGATATTATCT
GCTGAAATAGCTGTGCTGGTATGGGAGGGAGGTTTCAAAATATGTAATAT
ATTTATCAGCTGCCACCTGAGATGATGCATTATGAATTCAGAGCTGTCAT
CACCTCTCCGCCACCCCTACCCTCACCCCAAGCACATATTTGTTCATGTG
GTTTACACCTGTGGGACTGTGGGATGTGAGACAGGAATCTGATTACTGTT
TGGGAGACAACTCTGTCTCTAAAACTGATCCATGTATCTTTGCTTCCCTG
GAGAAGCAGGGGGACTCTTGCCAACCCTTCATGTGCTCCAGCTGGGTTGG
AGCTCTGGCCCAATACTTTTGGAATTTGGTACCAATGACTAACTCTGAGG
CTGTCACAAAATGAGCCCAATAATGTCTGTCCTCCTCGACCTCTGAGTCT
CTGTCCTACGATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_c08.g1 MSMg01no500_c08.g1 CHROMAT_FILE:
MSMg01no500_c08.g1 PHD_FILE: MSMg01no500_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:44 2005
         (604 letters)



>mm_chr4_10221854_10222857
          Length = 1004

 Score = 1108 bits (573), Expect = 0.0
 Identities = 597/605 (98%), Gaps = 2/605 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagagaactggttcccattaattaagaccagtttctaagactgaatcaaagctgccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 catagagaactggttcccattaattaagaccagtttctaagactgaatcaaagctgccat 745

                                                                       
Query: 61  ctcaaaggttttgaaagtcaggatgtaaaatacaagttacaaccccaacaccttcccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctcaaaggttttgaaagtcaggatgtaaaatacaagttacaaccccaacaccttcccctt 685

                                                                       
Query: 121 atccatctccttgagccatttcaggccattgggtaacatatgacttgcccttagtcagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atccatctccttgagccatttcaggccattgggtaacatatgacttgcccttagtcagtc 625

                                                                       
Query: 181 ctagatattatctgctg-aaatagctgtgctggtatgggagggaggtttcaaaatatgta 239
           ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 624 ctagatattatctgctgaaaatagctgtgccggtacgggagggaggtttcaaaatatgta 565

                                                                       
Query: 240 atatatttatcagctgccacctgagatgatgcattatgaattcagagctgtcatcacctc 299
           | | ||  | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acagatgca-cagctgccacctgagatgatgcattatgaattcagagctgtcatcacctc 506

                                                                       
Query: 300 tccgccacccctaccctcaccccaagcacatatttgttcatgtggtttacacctgtggga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccgccacccctaccctcaccccaagcacatatttgttcatgtggtttacacctgtggga 446

                                                                       
Query: 360 ctgtgggatgtgagacaggaatctgattactgtttgggagacaactctgtctctaaaact 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtgggatgtgagacaggaatctgattactgtttgggagacaactctgtctctaaaact 386

                                                                       
Query: 420 gatccatgtatctttgcttccctggagaagcagggggactcttgccaacccttcatgtgc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatccatgtatctttgcttccctggagaagcagggggactcttgccaacccttcatgtgc 326

                                                                       
Query: 480 tccagctgggttggagctctggcccaatacttttggaatttggtaccaatgactaactct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccagctgggttggagctctggcccaatacttttggaatttggtaccaatgactaactct 266

                                                                       
Query: 540 gaggctgtcacaaaatgagcccaataatgtctgtcctcctcgacctctgagtctctgtcc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaggctgtcacaaaatgagcccaataatgtctgtcctcctcgacctctgagtctctgtcc 206

                
Query: 600 tacga 604
           |||||
Sbjct: 205 tacga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)