XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAGG
GGTCTCTATTCTCTGATCATCAGTCAAGCTTCTTTTTCCAAGCAACAAGA
GAAATATAAACAAAACAAAACAAAAACAAAACTGAACCACACAAAAATTA
TCATAGTTTTATTACATCTACCTTATTCTATAATGAATATTTGAATACAT
ATACATAGTGAATATCAGAAAGCACAGCACAATCAGCTCTTTATATCTTT
CTCAAACTCTGTCTCTTGACTAAGCAAAACATGGCATATCTACCTATTGT
CAACCATGTATTTACTTTCTTGTAATGCCTACTCCACCCAAGCCTGGAAC
CACTAAAGGTTCAAAGTTCCATTTAAATGTGTGATCTTCTCCCCACATTA
GTCAGCTAGTCTTGGGCTTTAGTATATCAGAAGATCATTACACTTTTTGA
CTATTGTTAAGTATTACACTATCAACAATATGTATCAGTATGAGTATGTG
ATATCTGTCAGTGGTTTCTAATGCTTTTCTGAAGTCTCTCTTCTGGGTAA
TGTCTAAGGATTAATTTATGATACAAGCATTAGGCCGAAGTCCTTATGTG
GCCATTTATGTTATAGGAAAGAATTATCCCATGCTACTCCAAATGAATCC
AAATATCACTAAATGAGTGATAGTTGTTTATCCACCATCAGATCAAC

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCACTAAACCCATCTGGTCCTGGGCTTTT
TTTGGTTGGGAGACTATTAATGTCTGCCTCTATTTCTTTAGGGGATATAG
GATTGTTTAGATCATTAACCTGATTCTGATTTAACTTTGGTACCTGGTGT
CTGTCTCAAAATTTGTCCATTTCATCCAGGTTTTCCAGTTTTGTTGAGTA
TAGCCTTTTGCAGAAGGATCTGATGGTATTTTGGAATTCTTCAGGATCTT
TTGTTATGTCTTTTTGTTCATTTCTGATTTTGTTAATTAGAATACTTTCC
CTGTGCCCTCTAGTGAGTCTGGCTAAGGGTTTATCTATATTGTTGATTTT
CTCAAAGAACCAGCTCCTCGATTTGTTGATTCTTTGAATAGTTCTTCTTG
TTTCCACTTGGTTGATTTCACCCCTGAGTTTGATTATTTCCTGCTGTCTA
CTCCTATTGGGTGAATTTGCTTCCTTTTCTTCTATAACTTTTAGGTGTGT
TGTCAAGCTGCTAGTGTGTGCTCTCCCTAGTTTCTTTTTAGAGGCACTCA
GAGCTATGAGTTTTCCTCTTAGAAATGCTTTCATTGTGTCCCATAAGTTT
GGGTATGTTGTGGTTTCATTTTCATGAAACTCTAAAATGTCTTTAATTTC
TTTCTTTATTCCATCCTTGACCAAGGTATCAT

Query= MSMg01no500_j15.b1 MSMg01no500_j15.b1 CHROMAT_FILE:
MSMg01no500_j15.b1 PHD_FILE: MSMg01no500_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:16 2005
         (637 letters)



>mm_chr4_50678460_50679496
          Length = 1037

 Score = 1156 bits (598), Expect = 0.0
 Identities = 629/642 (97%), Gaps = 5/642 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctgatcatcagtcaagcttctttttccaagcaacaagagaaatat-----aaacaa 55
           ||||||||||||||||||| |||||||||||||||||||||||||||||     ||||||
Sbjct: 930 ttctctgatcatcagtcaaacttctttttccaagcaacaagagaaatataaacaaaacaa 871

                                                                       
Query: 56  aacaaaacaaaaacaaaactgaaccacacaaaaattatcatagttttattacatctacct 115
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 870 aacaaaacaaaaacaaaactgaaccacacaaaaattatcataattttattacatctacct 811

                                                                       
Query: 116 tattctataatgaatatttgaatacatatacatagtgaatatcagaaagcacagcacaat 175
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 cattccataatgaatatttgaatacatatacatagtgaatatcagaaagcacagcacaat 751

                                                                       
Query: 176 cagctctttatatctttctcaaactctgtctcttgactaagcaaaacatggcatatctac 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 cagctctttatatctttctcaaactctgtctcttgactaagcaaaacatggcatatctac 691

                                                                       
Query: 236 ctattgtcaaccatgtatttactttcttgtaatgcctactccacccaagcctggaaccac 295
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ctattgtcaaccaagtatttactttcttgtaatgcctactccacccaagcctggaaccac 631

                                                                       
Query: 296 taaaggttcaaagttccatttaaatgtgtgatcttctccccacattagtcagctagtctt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 taaaggttcaaagttccatttaaatgtgtgatcttctccccacattagtcagctagtctt 571

                                                                       
Query: 356 gggctttagtatatcagaagatcattacactttttgactattgttaagtattacactatc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gggctttagtatatcagaagatcattacactttttgactattgttaagtattacactatc 511

                                                                       
Query: 416 aacaatatgtatcagtatgagtatgtgatatctgtcagtggtttctaatgcttttctgaa 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aacaatatgtatcagtatgagtatgtgatatctgtcagtggtttctaatgcttttctgaa 451

                                                                       
Query: 476 gtctctcttctgggtaatgtctaaggattaatttatgatacaagcattaggccgaagtcc 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 450 gtctctcttctgggtaatgtctaaggattaatttatgatacaagcattaggcagaaatcc 391

                                                                       
Query: 536 ttatgtggccatttatgttataggaaagaattatcccatgctactccaaatgaatccaaa 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 390 ttatgtggccatttatgttataggaaagaattatcccatgctactccaaatgaatacaaa 331

                                                     
Query: 596 tatcactaaatgagtgatagttgtttatccaccatcagatca 637
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatcactaaatgagtgatagttgtttatccaccatcagatca 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)