XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGATCCGCGGAATTCTTTGTT
CAGTTCCCAGCCCCATTTTTTTCCATTTTTTATTAGGTATTTAGCTCATT
TACATTTCCTATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACT
CCCCTACCTACCCACTCCCCCTTTTTGGTCCTGGCGTTCCCCTGTACTGG
GGCATATAAAGTTGGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCG
ACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGT
ACTGCTTAGTTTATATTTTTGTTCCACCTATAAGGTTGAAGTTCCCTTTA
GTTCCTTGGGTGCTTTCTCTAGTTCCTCCATTGGGGGCCATGTGGTCCAT
TCAATAGCTGACTGTGAGCATCCATTTCTATGTTTGCTAGGCCCTGGCAT
AGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTTACTA
GTGTATGCAATGGTGTCAGCGTTTGGAAGCTGATCATGGGATGGATCTCT
GGATATGGCAATCAATAGATAGTCCATCCTTTCGTCACAATTCCAAATTT
TGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTTCCTATTCTAAGAAAGG
GCAAAGTGTCCACACTTTGGTCTTCGTTCTCTTGAGTTTAAAGTGTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAAAGAATTACAGATCATATTTTATATATTCACATGTTATACAAA
GCCGTACTCTAAGGACTATAATAAGACTCACTAACTTACGATTTCAGCAA
AAAATAAAAAACTTTTAAAAAATCATAAAAATTAAAATAATTAAGATTTT
AGCAATATTAAGTTCACCCTGAAACAACTTATGTTACTTTGTCTGTTTTA
TCACAACCATCTCCAAAGAGAAAATCAGGAATAGATTTGGGGGGATATTG
AACACTGTGGAAGGTTATGGCCTGCAACTGTCCCTATATTGAGCCGTAAT
CAATACTTCAGAAAAAGGCCCAACCGGGAGAAGGACTCCTGGAATGTGGG
TACTTGTTTTGTGAATGTAAATGCATTTCTTAACTCAGAGACTGCCTAGT
TTATTTCTTTTTTTATTAATCATTGTATCCGTTTACATTTCAAATGATAT
CTCCCTTCCAGGTTACCCCTCGAAAGACACAATCATCCTGTCCCGTTCTG
GCCCCTCCCCTTTGCCTCAAGGAGAGAGATCCTCCACCCACACACTCACA
CCCACCTCACTGCTCTAGCATCCCTCTAAGCTGGGGAATCAGGCTCCACA
GGGACAGCCAGCTCCCTTACTTTGATGCCCCATAAGGCN

Query= MSMg01no500_j22.g1 MSMg01no500_j22.g1 CHROMAT_FILE:
MSMg01no500_j22.g1 PHD_FILE: MSMg01no500_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:17 2005
         (486 letters)



>mm_chr4_66847193_66848080
          Length = 888

 Score =  781 bits (404), Expect = 0.0
 Identities = 466/490 (95%), Gaps = 13/490 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   aattacagatcatattttatatattcacatgttatacaaagccgt-actctaaggactat 63
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 734 aattacagatcatattttatatattcacatgttatacaaagccgtaac-ctaaggactat 676

                                                                       
Query: 64  aataagactcactaac--ttacgatttcagc-aaaaaataaaaaacttttaaaaaatcat 120
              |||||||||||||  |||| |||||||| |||||||||| |||||||||||||||||
Sbjct: 675 --caagactcactaacttttactatttcagcaaaaaaataaagaacttttaaaaaatcat 618

                                                                       
Query: 121 aaaaattaaaataattaagattttagcaatattaagttcaccctgaaacaacttatgtta 180
           || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 617 aagaattaaaataattaagattttagcaatattaaattcaccctgaaacaacttatgtta 558

                                                                       
Query: 181 ctttgtctgttttatcacaaccatctccaaagagaaaatcaggaatagatttggggggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctttgtctgttttatcacaaccatctccaaagagaaaatcaggaatagatttggggggat 498

                                                                       
Query: 241 attgaacactgtggaaggt--tatggcctgcaactgtccctatattgagccgtaatcaat 298
           |||||||||||||||||||  ||||||||||| ||||||||||||||| | || ||||||
Sbjct: 497 attgaacactgtggaaggttgtatggcctgcacctgtccctatattgatctgtcatcaat 438

                                                                       
Query: 299 acttcagaaaaaggcccaaccggg--agaaggactcctggaatgtgggtacttgttttgt 356
           |||||||||||||||||||  |||  ||||||||||||||||||||||||||||||||||
Sbjct: 437 acttcagaaaaaggcccaa--ggggaagaaggactcctggaatgtgggtacttgttttgt 380

                                                                       
Query: 357 gaatgtaaatgcatttcttaactcagagactgcctagtttatttctttttttattaatca 416
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaatttaaatgcatttcttaactcagagactgcctagtttatttctttttttattaatca 320

                                                                       
Query: 417 ttgtatccgtttacatttcaaatgatatctcccttccaggttacccctcgaaagacacaa 476
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttttatccgtttacatttcaaatgatatctcccttccaggttacccctcgaaagacacaa 260

                     
Query: 477 tcatcctgtc 486
           ||||||||||
Sbjct: 259 tcatcctgtc 250


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 888
Length adjustment: 10
Effective length of query: 476
Effective length of database: 878
Effective search space:   417928
Effective search space used:   417928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)