ACTACTATATTCAGAGGTCCGCGGAATTCTTCTAGGCCATGCTCTGAGGA
TGTCTCCAAGTCCTTCTCAAGCAAGGTTTTTGGTTTGGGTCAGAGTAACT
CTAATCCTTCCAGGCCTGAGCCAAACCTATATATAAAGGCTCTTTCCAGA
GAAGCCTTGGTCCGGAGTCATAACATCTGCAGGCAGGGCTCACAGGTGCC
TCTTCTTCCCTCTAATACTTCTTTGGACCGTCTGCACTCTGGGAACATCT
CCAAGGTGAACCTGGGCATAGCTCCAAACTCAAACGAGGCCATCACGTTG
ACTTCACACACTATTTTTGCATCCATTTCTAAAGAAGCCTTGAGTGCACC
CTGGAACACGGGCTCCAAGGGGTCCATCAATGGGACTTCCACCATCCAAC
CCAGGTCTGGTTTAAATGTGACAGTCACTCATGCTTCACATGTCAGCATG
ATTCCTGGTTCCAGTGAAGGCCTCAGTCTACAGTCAAGTGCCCGAGTACC
CAACTCCACTCTCTCTCCATCTTCCTGCATGACGCTGATCATGGACTCTG
AGTCACCGAGCATGGACTCCAGCTTCCTGGTGACCGACACCTCCACCCTG
ACCCTGAGCAGCCATCGAGATTATTCTGAAGAACACAGCATCC

GCTGGACGTCGCCGGTAGGGGGCGGTCGTGGGGGTTTGTGCGCAGGTCTN
NCCTTNGTCTTCCTANCGGGAATTCTATANTCCTTGGCCTTTTTGGCCAC
TATTGATTCNAAAGGAACGCCCTCTCCCCTTCCTTGAACCCTCTTGAAAA
AAATGTTTCCAGGGGAGGCCCCTTGAACTCTGTGGACCAAACTGTTGGGA
AAATTTTCGTTTAAATGTTGTGTTTGAAGTAAAAGGAAACTCTTTGTGGA
NTTCAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG
GGGGGTTGTTTTTGGGGGGGGGNNNNNNNNNNGGGGNNNNNNNNNNNNNN
NNNGGGGGCCCCCCCNNNNNNGAAAAAANNNNNGNNTTNCCCCCACAAAA
ACACAAAANANNGGGGCGCGCCCCCCCCCCCCTCTTCTTTATCATCATCT
TTCCTCCCCCCCTCCCTCTTTTTGTGTGGGGGGGGAGGAAAAAAAAAAAA
AAAAAAAGGAAGGAGAGAGGGGGGTGGGGGTGTGAGAAAACCACCCGACC
CCCCCGCCGGGGGGGTGGGGGGAGGAAAACAATTTTATTTTCCTCCTCTC
TTGGCTGCGGTGGCGTGTGGGTGTGTG

Query= MSMg01no500_m23.b1 MSMg01no500_m23.b1 CHROMAT_FILE:
MSMg01no500_m23.b1 PHD_FILE: MSMg01no500_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:31 2005
         (465 letters)



>mm_chr4_106393009_106393876
          Length = 868

 Score =  866 bits (448), Expect = 0.0
 Identities = 462/468 (98%), Gaps = 3/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttctaggccatgctctgaggatgtctccaagtccttctcaagcaaggtttttggtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tcttctaggccatgctctgaggatgtctccaagtccttctcaagcaaggtttttggtttg 609

                                                                       
Query: 61  ggtcagagtaactctaatccttccaggcctgagccaaacctatatataaaggctctttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ggtcagagtaactctaatccttccaggcctgagccaaacctatatataaaggctctttcc 549

                                                                       
Query: 121 agagaagccttggtccggagtcataacatctgcaggcagggctcacaggtgcc---tctt 177
           ||||||||||||||||||||||||||||||| |||||||||||||||||| ||   ||||
Sbjct: 548 agagaagccttggtccggagtcataacatctccaggcagggctcacaggtacctcttctt 489

                                                                       
Query: 178 cttccctctaatacttctttggaccgtctgcactctgggaacatctccaaggtgaacctg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cttccctctaatacttctttggaccgtctgcactctgggaacatctccaaggtgaacctg 429

                                                                       
Query: 238 ggcatagctccaaactcaaacgaggccatcacgttgacttcacacactatttttgcatcc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggcatagctccaaactcaaacgaggccatcacgttgacttcacacactatttttgcatcc 369

                                                                       
Query: 298 atttctaaagaagccttgagtgcaccctggaacacgggctccaaggggtccatcaatggg 357
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 368 atttctaaagaagccttgagtgcaccctggaacacaggctccaaggggtccatcaatggg 309

                                                                       
Query: 358 acttccaccatccaacccaggtctggtttaaatgtgacagtcactcatgcttcacatgtc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 acttccaccatccaacccaggtctggtttaaatgtgacagtcactcatgcttcacatgtc 249

                                                           
Query: 418 agcatgattcctggttccagtgaaggcctcagtctacagtcaagtgcc 465
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agcatgattcctggttccagtgaaggcctcagtctacagtcaagtgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 868
Length adjustment: 10
Effective length of query: 455
Effective length of database: 858
Effective search space:   390390
Effective search space used:   390390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)