BAC Information

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BAC

Clone NameMSMg01-500N03
Chromosome4 (Build37)
Map Location 44,260,527 - 44,260,836
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38
Downstream geneMelk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500N03.T7 (MSMg01no500_n03.b1)MSMg01-500N03.TJ (MSMg01no500_n03.g1)
ACCAG576567AG576568
length609623
length of high quality
(start - end)
237 (46 - 282)311 (291 - 601)
definitionCHROMAT_FILE: MSMg01no500_n03.b1 PHD_FILE: MSMg01no500_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:31 2005CHROMAT_FILE: MSMg01no500_n03.g1 PHD_FILE: MSMg01no500_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATAGATCCCGAGGTGGGCGGAATTCTCAAGGATACTGAACGAGGATTTC
CATTATTTTGTTGTGGTGATGTCCCCTACCCCCAATTTGGCGGTCTGTGA
TTATTCCTTGTGGTTTTGAGGGGGTGGGTTAACCTTTTTAAGTTGGAGTT
TTCCTTCCCTGGGGCTGAATTTGTAATTAGATACTACTTAAATTTGGTTT
TATCATGAAGTGTCTTATTTTCTCCATTTATTGTGACTGCAAGTTTTGTT
GGATATAGCAGTCCGTGTGGTCTCTTAGAGTCNGTAGATATCTGTCCAGG
CCCTTCTGGCTTTTAGGGTCTCCATTGCAAAGTCAGGTGTTAGCAGAATG
GCTCTGCCCTTTATGTGTTTGGTCTTTTCCTTGAATCCTCTACTATTCCT
TCTTTGCTCTAAATGTCTAGTGTTTTGATTATTCCTCCTTTGCTCTAAAT
GTCTAGTGTTTTGATTATTATGTGCTGAGAGGAGTTTCTTTTCTGGTCCA
TTTAATTTGGTGCTCTGTGTGCTTCCTGTACCTTGACAGGCATGTCCTTA
GAAGGCTAAGAAATGCTCGTCTGTGATTCTGTTGAAAATAGGTTTTGTGT
CTTTGACCT
NGGCATCGGAATTGAGGNGACACTATANAAGGTGCGAAAAATTGGCAGAT
TTCCAGAGTAGTAACTAGTTACTTAGCCATAAGTAAAGGAATGCGAAGGA
CTGCCAGCACACCATGGGAATTGGTAAAAGCAAAGATGAATCCCACTATA
GGTTTCAGAGATTTTGGACTTCTGGACCTTAGGACTTAAGCAATCCATTT
CAGTTGTTTTAAGCATTTAGTTTGTGGTATTTGTTATGACAGCCCTAGAA
ACAAACACCAAGGTTCAACCATTAAACCCAGTCCGATAGATCTTACCCCA
AGATACACAAGAGGCCTTCTTTCTCTGTCCCATTTCTATTTCTTTAATAG
GTTGCTGGTATCCTTGGCCATTTGCTTGCTCAACACACACACAATCACAC
CCACGACATTCCCCCATCCCCCTCATGACAGGCAGCACACCCGACAGTCT
GTTTATTTCCCAACATGCTCTGCTCAGGGCCAGTCAGGTCCCCTGCCCCC
TGCCTCTTCCTGGCTCTGGGCCAGCCCATCTCCTCTGGGGAGACAGTAGA
TTGAAGCCCCCTTCTGGGTTGCCAAGGCGACAGTGCCGATTGAGTGCCCT
GGAGCCAAGCAGCTGTGGCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_n03.g1 MSMg01no500_n03.g1 CHROMAT_FILE:
MSMg01no500_n03.g1 PHD_FILE: MSMg01no500_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:31 2005
         (311 letters)



>mm_chr4_44260327_44261037
          Length = 711

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaccccaagatacacaagaggccttctttctctgtcccatttctatttctttaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tcttaccccaagatacacaagaggccttctttctctgtcccatttctatttctttaatag 451

                                                                       
Query: 61  gttgctggtatccttggccatttgcttgctcaacacacacacaatcacacccacgacatt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 450 gttgctggtatccttggccatttgcttgctcaacacacagacaatcacacccacgacatt 391

                                                                       
Query: 121 cccccatccccctcatgacaggcagcacacccgacagtctgtttatttcccaacatgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cccccatccccctcatgacaggcagcacacccgacagtctgtttatttcccaacatgctc 331

                                                                       
Query: 181 tgctcagggccagtcaggtcccctgccccctgcctcttcctggctctgggccagcccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgctcagggccagtcaggtcccctgccccctgcctcttcctggctctgggccagcccatc 271

                                                                       
Query: 241 tcctctggggagacagtagattgaagcccccttctgggttgccaaggcgacagtgccgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcctctggggagacagtagattgaagcccccttctgggttgccaaggcgacagtgccgat 211

                     
Query: 301 tgagtgccct 310
           ||||||||||
Sbjct: 210 tgagtgccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)