Query= MSMg01no500_o24.b1 MSMg01no500_o24.b1 CHROMAT_FILE:
MSMg01no500_o24.b1 PHD_FILE: MSMg01no500_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:40 2005
(520 letters)
>mm_chr4_119639558_119640473
Length = 916
Score = 919 bits (475), Expect = 0.0
Identities = 508/523 (97%), Gaps = 10/523 (1%)
Strand = Plus / Plus
Query: 1 aattattccaaatacaacatcatctcgtggactgtgtatcggggctcaggtgtcattgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattattccaaatacaacatcatctcgtggactgtgtatcggggctcaggtgtcattgca 260
Query: 61 ccatagtctgctacagaaggtggaaagatactgtaatccaccctcttgggagtgggagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatagtctgctacagaaggtggaaagatactgtaatccaccctcttgggagtgggagag 320
Query: 121 ctcacagtggggattttctagtggttg--ttttttttttttacttcatttttaggacagt 178
||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 321 ctcacagtggggattttctagtggttggctttttt------acttcatttttaggacagt 374
Query: 179 gatggcacacgtgaactgtctgtgatatggctgcccacccaacagccttccctctacttt 238
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 375 gatggcacacgtgaactgtctgtggtatggctgcccacccaacagccttccctctacttt 434
Query: 239 ccctgaatcattgacccattttactgataaagaaactgaggcactgggaggagaactcac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 435 ccctgaatcattgacccattttactgataaagaaactgaggcactgggaggagaattcac 494
Query: 299 ctgaagcagagcagaaagtggccaagaggcagcagggacccagggccacctgaactggga 358
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 495 ctgaagcagagcagaaagtggccaagaagcagcagggacccagggccacctgaactggga 554
Query: 359 tcagcctgacaattgggtgtgtctgttctgacaaggaatctaagatgtgagataactggt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcagcctgacaattgggtgtgtctgttctgacaaggaatctaagatgtgagataactggt 614
Query: 419 t-gggtgacctttgacaagtcacctggcacctccttgggctctagcttcagtctctgttt 477
| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 615 ttggg-gacctttgacaagtcacctggcacctccttggactctagcttcagtctctgttt 673
Query: 478 tcaggttgggctggctcagaacttcttaaacttttgcacagag 520
||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 674 tcaggttgggctggctcagaacttcttaaacttttacacagag 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 916
Length adjustment: 10
Effective length of query: 510
Effective length of database: 906
Effective search space: 462060
Effective search space used: 462060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_o24.g1 MSMg01no500_o24.g1 CHROMAT_FILE:
MSMg01no500_o24.g1 PHD_FILE: MSMg01no500_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:40 2005
(499 letters)
>mm_chr4_119803426_119804324
Length = 899
Score = 949 bits (491), Expect = 0.0
Identities = 497/499 (99%)
Strand = Plus / Minus
Query: 1 atgtagccctcaaagaatcctggcatcactggggaactgggggttctattcttacgctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 atgtagccctcaaagaatcctggcatcactggggaactgggggttctattcttacgctca 640
Query: 61 tgctgtggataaggaaaccgaggtaagggggatcaggtaaccttcccaagtaaggcctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tgctgtggataaggaaaccgaggtaagggggatcaggtaaccttcccaagtaaggcctag 580
Query: 121 ggcttcactggggcaaacaagataatctgctttctggtttctcagtgtgggtttcaccac 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 579 ggcttcactggggcaaacaagatcatctgctttctggtttctcagtgtgggtttcaccac 520
Query: 181 gagccagctgtaatgctgtgcctcagtctctccttttgttaagtggatgtctcactgtat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gagccagctgtaatgctgtgcctcagtctctccttttgttaagtggatgtctcactgtat 460
Query: 241 ggccttttctgagaggaaaaaataatgcaggcctggtacacagcaagggcccagataatt 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggctttttctgagaggaaaaaataatgcaggcctggtacacagcaagggcccagataatt 400
Query: 301 acagccactatgaccccattactgatggcatctatcactctgggacagggcatgctggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acagccactatgaccccattactgatggcatctatcactctgggacagggcatgctggct 340
Query: 361 ggtccagcagacagtcacggtcagttaaaatgcaaaccagatgctaacatgaccaggctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ggtccagcagacagtcacggtcagttaaaatgcaaaccagatgctaacatgaccaggctg 280
Query: 421 gcctacacagcggctctgggcagatggcagagtttagcttctgtgagttgctgggctagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gcctacacagcggctctgggcagatggcagagtttagcttctgtgagttgctgggctagg 220
Query: 481 ctggcctcagtctttaggg 499
|||||||||||||||||||
Sbjct: 219 ctggcctcagtctttaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
