Query= MSMg01no501_g17.b1 MSMg01no501_g17.b1 CHROMAT_FILE:
MSMg01no501_g17.b1 PHD_FILE: MSMg01no501_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:15 2005
(687 letters)
>mm_chr4_100579399_100580485
Length = 1087
Score = 1261 bits (652), Expect = 0.0
Identities = 673/680 (98%)
Strand = Plus / Minus
Query: 5 gaattcttaggtctgctccaggcctgctggtaccaatatccataaagcttgggtcagtgc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gaattcttaggtcagctccaggcctgctggtaccaatatccataaagcttgggtcagtgc 825
Query: 65 ttacttggcctgcaggtagtaactgctgaaggaattggagatggaagggccggataagca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ttacttggcctgcaggtagtaactgctgaaggaattggagatggaagggccggataagca 765
Query: 125 agggcaagagactcgaaagggaagaatttccatccagtgctttgtggacaaaacacatct 184
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 764 agggcaagagacttgaaagggaagaatttccatccagtgctttgtggacataacacatct 705
Query: 185 tcctggggaaggaacagggcttgaaagaaaattaaacacagttgtcaaaggaccatttct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tcctggggaaggaacagggcttgaaagaaaattaaacacagttgtcaaaggaccatttct 645
Query: 245 ttggccttgtgatccagaaagaacaaaagagcagaagtcctcttcacaaaaacacccaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttggccttgtgatccagaaagaacaaaagagcagaagtcctcttcacaaaaacacccaag 585
Query: 305 tcacaatgtttcattctaccagaaaaagagtaacaagaaactgaaccatgtcttcatttc 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 584 tcacaatgtttcattctaccagaaaaagagtaacaagaaattgaaccatgtcttcatttc 525
Query: 365 catgtatgctaccttagaatcaggcttgaaaaaagaacccgggtcagctgctatgtccag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 catgtatgctaccttagaatcaggcttgaaaaaagaacccgggtcagctgctatgtccag 465
Query: 425 aaatagcattatatagaaaaactgacactagacattcttgaagtgacctgaccactatac 484
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 464 aaatagcattatatagaaaaactgacactaaacattcttgaagtgacctgaccactatac 405
Query: 485 gtgcattacaacacaccagtgtcccgtatcaagaggaatgatttcatgtaccaggtaaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtgcattacaacacaccagtgtcccgtatcaagaggaatgatttcatgtaccaggtaaaa 345
Query: 545 aatatctttaaaataaatggacacatttcctgaactactatgcacataacagaatgaggt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aatatctttaaaataaatggacacatttcctgaactactatgcacataacagaatgaggt 285
Query: 605 gcaaatgtttgtgggcttagagtagaaagatgcaagggttaactaaccccaatggctttt 664
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 284 gcaaatgtttatgggcttagagtagaaagatgcaagggttaactaaccccaatgactttt 225
Query: 665 ctaacatctccagtgagtta 684
||||||||||||||||||||
Sbjct: 224 ctaacatctccagtgagtta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_g17.g1 MSMg01no501_g17.g1 CHROMAT_FILE:
MSMg01no501_g17.g1 PHD_FILE: MSMg01no501_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:15 2005
(524 letters)
>mm_chr4_100422574_100423497
Length = 924
Score = 948 bits (490), Expect = 0.0
Identities = 519/534 (97%), Gaps = 10/534 (1%)
Strand = Plus / Plus
Query: 1 tgttgccagttactaaaataagatttttctcatcccattctaagatataaaacttgagag 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttgccagttactaaaataagagttttctcatcccattctaagatataaaacttgagag 260
Query: 61 cctgccatggaatactgaccccagggcaacagaagaagttggaatggtgggacatgaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgccatggaatactgaccccagggcaacagaagaagttggaatggtgggacatgaagg 320
Query: 121 caatgtgttggtgacagtaaagggggcctcgagtactccatgatgaatggcactacctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgtgttggtgacagtaaagggggcctcgagtactccatgatgaatggcactacctta 380
Query: 181 tttagctgtctcacaaagtgtccttcctgtttgattgcccacttttgatttttctaacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttagctgtctcacaaagtgtccttcctgtttgattgcccacttttgatttttctaacag 440
Query: 241 ccaagtttcctctctgtcttcctgcccacattttgagagtaagagtaggctctttctatg 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagtttccactctgtcttcctgcccacattttgagagtaagagtaggctctttctatg 500
Query: 301 tgttacaagaactcataccccacctaagaagttctggtttagaacaaaaactggtaattc 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttacaagaactcataccccacccaagaagttctggtttagaacaaaaactggtaattc 560
Query: 361 acaccatccattcagatgtacatagaaattccttctaagagtctggcttatgggagggga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaccatccattcagatgtacatagaaattccttctaagagtctggcttatgggagggga 620
Query: 421 attcaggaacatacacagacacagacaca------gacacacacacacacacacacacac 474
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 621 attcaggaacatacacagacacacacacacacacagacacacacacacacacacacacac 680
Query: 475 aca----aaagatgaagaaagtcagtataaaagtctttgggagaaaaggcttaa 524
||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 acacacgaaagatgaagaaagtcagtataaaagtctttgggagaaagggcttaa 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
