GACTCACTATAGTCAGAAGATGCGCGGAATTCAAAATATCTTTACTTTGA
GGTGATATGACAGTATACTTAAAGGACACCAAAAATTCCACTAGAGAACT
CCCACAACTGATAAACAACTTCAGCAAAGTGGACAGATATAAAATTAACT
CAAACAAATCAGTAGCCTTCCTATACTTAAAATATAAATGGGCTGAAAAG
AAATTAGGGAAATGACACCCTTCACAATAGTCACAAACAATATAAAATAT
CTTGGTGTGACTCTAACCAAACAAATGAAAGATCTGTACGACAAGAACTT
CATTTCTCTGAAAGAAGATCTCAGAAGATGGAAAGATCTCTCATGCTCAT
GGATTGGCACAATTAATATAGTAAAAAATGGCTATCTTGCTGAAAACAAT
CTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTAGTTA
GAAAGAGCAATTCTCAAATTCATTTGGAATAACAAAAAAAAAATAGGATA
GCAAAAACTATTCTCAAAAATAGAAGAACTTCTGGGGGAATCACCATCCC
TGACCTCAAGCCGTACTACAGAGCAATTGTGATAAAAACTGCCTGGTATT
GGTACAGACACAGGCAGGTAGATCAATGGAATAGAATTGAAGACGCAGAA
ATGAACCCGCACACCTATGGTCACTTGATCTTTTGACAGGGAGCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCAAAGAAACTGGAATTTGAAAGGAAATGTTTATAGTTAATGT
TTAATTTAAAAAATGTCTATTGTTAAACCAAACATGGTGACACATGCCTA
TAACCCCATCACTTGAGTTCTGCCTGGAGTTCAGGGCTAGTTAAGACTAC
ACAATAAATCCCTGTCTAAACAAACAAACAGACAAACAAACAAACAAACA
AACAAACAAATAAATAAATATTCTATTGTAGGGAAATGCACAAAGAAAAT
TGACTGTTTTCTCACTATCCTAAAATGACAACTCTTTGCACTTTGTTATA
TATGTCTTTCACATGTTTTTAAGTTGAAGTTTTAAGTTCTTCTGACACTT
ATGATTAAATATTTGCAACTGAAAATAAGTCTGTATTAACCACTTTAAGT
GTATGGAGAGGAACAATATAGACATTCACATGGTGCAGACACTACTACCT
GAATGCTTTGTATTTTACAAGACTAGAATTTACATGGTGCCTGTCTTTAA
CCCTGGCCCTCTGGAGGCAGAGACAGGGGAACCCAGGGTTGAAAGCCAGT
CTGCAACATGATAGGTTAGCCTGGGCTAATAGTGAGACCTTGGACTGATC
TGTCTCCTCTAGGGATATATACTAAGCCACTATCAGTGACAGTGACCAAA
AATTCTTCTGGGGC

Query= MSMg01no501_j09.g1 MSMg01no501_j09.g1 CHROMAT_FILE:
MSMg01no501_j09.g1 PHD_FILE: MSMg01no501_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:26 2005
         (559 letters)



>mm_chr4_10961178_10962133
          Length = 956

 Score =  922 bits (477), Expect = 0.0
 Identities = 527/551 (95%), Gaps = 15/551 (2%)
 Strand = Plus / Minus

                                                                       
Query: 19  aaaggaaatgtttatagttaatgtttaatttaaaaaatgtctattgttaaaccaaacatg 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 aaaggaaatgtttatagttaatgtttaatttaaaaaatgtctattgttaaaccaaacatg 897

                                                                       
Query: 79  gtgacacatgcctataaccccatcacttgagttctgcctggagttcagggctagtt--aa 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | 
Sbjct: 896 gtgacacatgcctataaccccatcacttgagttctgcctggagttcagggctagtttga- 838

                                                                       
Query: 137 gactacacaataaatccctgtctaaacaaacaaacag--------acaaacaaacaaaca 188
            ||||||||||||||||||||||||||||||||||||        | ||| ||| ||| |
Sbjct: 837 -actacacaataaatccctgtctaaacaaacaaacagataaataaataaataaataaata 779

                                                                       
Query: 189 aacaaacaaacaaataaataaatattctattgtagggaaatgcacaaagaaaattgactg 248
           || ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aataaataaataaataaataaatattctattgtagggaaatgcacaaagaaaattgactg 719

                                                                       
Query: 249 ttttctcactatcctaaaatgacaactctttgcactttgttatatatgtctttcacatgt 308
           ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttttcccactatcctgaaatgacaactctttgcactttgttatatatgtctttcacatgt 659

                                                                       
Query: 309 ttttaagttgaagttttaagttcttctgacacttatgattaaatatttgcaactgaaaat 368
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 658 ttttaagttgaagttttaagttcttctgacac---tgattaaatatttgcaactgaaaat 602

                                                                       
Query: 369 aagtctgtattaaccactttaagtgtatggagaggaacaatatagacattcacatggtgc 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aagtctgtattaaccactttaagtgtatggagaggaacaatatagacattcacatggtgc 542

                                                                       
Query: 429 agacactactacctgaatgctttgtattttacaagactagaatttacatggtgcctgtct 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agacactactacctgaatgctttgtattttacaagactagaatttacatggtgcctgtct 482

                                                                       
Query: 489 ttaaccctggccctctggaggcagagacaggggaacccagggttgaaagccagtctgcaa 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttaaccctggccctctggaggcagagacaggggaacccagggttgaaagccagtctgcaa 422

                      
Query: 549 catgataggtt 559
           |||||||||||
Sbjct: 421 catgataggtt 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 956
Length adjustment: 10
Effective length of query: 549
Effective length of database: 946
Effective search space:   519354
Effective search space used:   519354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)