BAC Information

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BAC

Clone NameMSMg01-501N06
Chromosome4 (Build37)
Map Location 78,292,196 - 78,292,567
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501N06.T7 (MSMg01no501_n06.b1)MSMg01-501N06.TJ (MSMg01no501_n06.g1)
ACCAG577330AG577331
length723759
length of high quality
(start - end)
575 (65 - 639)372 (330 - 701)
definitionCHROMAT_FILE: MSMg01no501_n06.b1 PHD_FILE: MSMg01no501_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:43 2005CHROMAT_FILE: MSMg01no501_n06.g1 PHD_FILE: MSMg01no501_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXATCGAGAGAGAGCCGCGGAATTCTCTGT
TTTGCATAAAACCTCATTGTTAGTAGGGTTATTTGTTTCTCTGGAGTCTA
ACTTCTTGAGTTCTTTGTATATAGTAGATATTAGCCCTGTATTGGATATA
GGATTGATAAAGATATTTTCCCAATCTCTTGGTTACCATTTTTTTGACAA
TGTCTTTTGCCTTACAGAAATACTTTCTGATGGGAGTCTGATATGGCTGT
CTCCTGAGAGGCTCTGCCAGAGCCTGACAAATACAGAGGCAGATGCTTGC
AGCAAACAATTTGTCTGAGCATGAAATCCTCGATGGAGGAGTTGGAGAAG
GGACTGAGGAGCTGAGGGCATTTGCAGCCCCATGGGGGAAACAACAGTGT
CAACTGTCCATACTCCTCGTAGCTCCAGGGGACTGAACCAAATGAGTACA
CATGGAGAGACTCGTGACTCCAGCTGCATACGTGGCAGAGGATGGCCTGG
TTGGACCTCAGTGGGAGGAGCAGAACTTTGGCCTGAGTGTGTTTGATGTC
ACAGTGTAGAAGAATGCCAGGGCCGAAAGACCGGAGTGAGTGGGTGGATG
GTAGGTGCAGGAGAACCTACATAGAGGCAGGGGGATGGAGGATGGCATAG
GAGGTTTTTTAATGAGAGACCCGGAAAGGGAAAACATTTGAAATATAAAT
AAAGAAATATCCCTTAAGTATCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAAAAAGTCACTCCTAGTCACTCCCATTCTCGG
GATGTAATAGTGGGGTGATGGGCAAGCAACGAATCGGGAGCTGTCACGCC
ATATCAGGTGCTGAAACGTCATGCTGCCGGTTATAAAAGCAGCACCATTT
TCCCGGTTTGGGATCTTCCTGAGAAGCAAGCAATAAAGCTTTTGCCGCGG
AAGATTCTGGTTTGTTGCGTCTTTCTTGCCGGTCGAGCGGGACGCAATAC
TCCTCAGTAACTTTGTCAAGCTCTTTTCTCTCCAGGCCACCATTTCATAT
TTTGTGCAAGTGACATTATTTAGTGGTGAAGCGCCCTCTCCACCCAGGCC
ACATTTGGCTACACTTGATTATTTTACATATAACATCATAGAGTCCCCAT
GACTGGATGATATGTTTCTTTAATTCCATGCAGCTACTGGCCACTTTTAT
TTTGTACTGAGCTAAGTTGTTTATCCCTTGAAGATTCATAGACTCCTTCT
AAGTGTAGACAAAATGCATCATCATTAAATGTCAAACATTGCTACATTTA
ATTTGAAAAAAGTATTTTCCTTCAGCAAATTCCTAGACNAATATCAAATT
GATCTCATACAAACCTTGGAAGTGAATGGGTTTCTTTTCACAGTCTGCAT
GTTGTTCTTGCCAAGAACTTGGAGAGGTTCAACAGGAATAAATTAATAGC
AATTTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_n06.g1 MSMg01no501_n06.g1 CHROMAT_FILE:
MSMg01no501_n06.g1 PHD_FILE: MSMg01no501_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:43 2005
         (372 letters)



>mm_chr4_78291996_78292767
          Length = 772

 Score =  706 bits (365), Expect = 0.0
 Identities = 370/372 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccaggccaccatttcatattttgtgcaagtgacattatttagtggtgaagcgccctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccaggccaccatttcatattttgtgcaagtgacattatttagtggtgaagcgccctct 260

                                                                       
Query: 61  ccacccaggccacatttggctacacttgattattttacatataacatcatagagtcccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacccaggccacatttggctacacttgattattttacatataacatcatagagtcccca 320

                                                                       
Query: 121 tgactggatgatatgtttctttaattccatgcagctactggccacttttattttgtactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgactggatgatatgtttctttaattccatgcagctactggccacttttattttgtactg 380

                                                                       
Query: 181 agctaagttgtttatcccttgaagattcatagactccttctaagtgtagacaaaatgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctaagttgtttatcccttgaagattcatagactccttctaagtgtagacaaaatgcat 440

                                                                       
Query: 241 catcattaaatgtcaaacattgctacatttaatttgaaaaaagtattttccttcagcaaa 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 catcattaaatgtcaaacattgctacatttaatttgaaaagagtattttccttcagcaaa 500

                                                                       
Query: 301 ttcctagacnaatatcaaattgatctcatacaaaccttggaagtgaatgggtttcttttc 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcctagacaaatatcaaattgatctcatacaaaccttggaagtgaatgggtttcttttc 560

                       
Query: 361 acagtctgcatg 372
           ||||||||||||
Sbjct: 561 acagtctgcatg 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)