BAC Information

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BAC

Clone NameMSMg01-501O03
Chromosome4 (Build37)
Map Location 132,998,307 - 132,998,549
singlet/doubletsinglet
Overlap genenone
Upstream geneMed18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1
Downstream gene4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501O03.T7 (MSMg01no501_o03.b1)MSMg01-501O03.TJ (MSMg01no501_o03.g1)
ACCAG577372AG577373
length692660
length of high quality
(start - end)
244 (54 - 297)258 (300 - 557)
definitionCHROMAT_FILE: MSMg01no501_o03.b1 PHD_FILE: MSMg01no501_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:47 2005CHROMAT_FILE: MSMg01no501_o03.g1 PHD_FILE: MSMg01no501_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGATCACTATTCGAACGGGGCGCGGAATTCAAGCATTTCAATAC
AAAGGGTGTGTAGGTGGGAAGGAGGTAATTTTGTTGGAATTCTTGTTGTC
TGTTGGCAAGAGGCTTCAATTGGATTCCAAGGGGAGGAGCTGGCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCCTTATGTCTTCT
CTTTTCATTGTTTCTCTGTTACTGTTCCATTTTTTACTACCAGTATACTG
AACCATTTTTTTCCTTTGAGAGACCGTGTCTATAGTTGGGTGTATCTTGT
TCNNTGTTATAGGAGAGTGTGTCAACCCTTGGGTGTGTGTTCTTTTCCTT
TGTCCTTGTGCTTAACATCCATCAGTGATGGACATGGCTTGGTGACTCAC
ATCCTTAGATCCGGCACACAAGAGGCAGAGGCAGGCTCATCTCTGAAGCC
ATCCCGGTCTATATAGTGAGTTCCAAGGCAGCCAGGACTACAAAATTAAT
CTCTGGCTCAAAAAAAGAAACAAACCTTTTCAATAAACTACAACCTGCTT
CATAGGGGCTTATCCTGAAATTATTTTCCTTGGCAAAGCCAAGTATCCGG
TCTTACTTGACTGAGGCTCTTGTTAGAGAGAGGAGCTGCTCTGATTTGCC
TGTGCTGGGCTGTGAACTGTGACATAGGTGGCTGAGGCAAAA
GTTTTCAAAACGGGGGNNGAACTATAGAAGTTTCCTCAAAGTAGCGCTTC
CTGCACTGGCTGGTCAGCTCATTGGTAAGCACCAGACACTAATGACTGCA
GGGGGGCAGCTAAACTCGGGACATTGTGCAGTAGAGTGGCTAGGAGTGCG
GTGCTCAGTCCATAGTGCAAAACATTATAAATGGGCAGCAGGGCTGTGGC
ACCAGCACTCTGGAGGCAGATGTGTTTAGATCTCCATGGGTTCAAGAGCA
ACCTGGCCTACAGAGTGAGTTCCAGGCCGGCCAGGGCTATANAGTGAGAC
TCTTTTTCCTTTCTTTTCCTTTCTTTTCTTTTCTTTCTTTCCTATTTATT
TGTTTGTTTGTTTGTTTGTTTGTTTATTTATTTATTTATTTATTTATTTA
TTTATTTATCTATCTATTTATATTTTGGTTCTTTGAGACAGGATCTCTTT
ACACAGCCCTGACTGTTTGGGACCTACTATGTGGACCAGGTTGGCCTTGA
ACTCACAGAGATCCACCTGCCTCTGCCTCGGGAGTGCTGAGATTACAAGG
GTGTGCCACCTGGCTGTGGACTGTTGTGATCTGAGCACAGATCAGGTGGG
ATCAGCTTGCAGACACTCTTCTAACAGACCATGGGTTATTTGCAGACTTT
GAGTGAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_o03.b1 MSMg01no501_o03.b1 CHROMAT_FILE:
MSMg01no501_o03.b1 PHD_FILE: MSMg01no501_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:47 2005
         (244 letters)



>mm_chr4_132998107_132998750
          Length = 644

 Score =  447 bits (231), Expect = e-130
 Identities = 240/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtgtgtaggtgggaaggaggtaattttgttggaattcttgttgtctgttggcaagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggtgtgtaggtgggaaggaggtaattttgttggaattcttgttgtctgttggcaagagg 260

                                                                       
Query: 61  cttcaattggattccaaggggaggagctggctctctctctctctctctctctctctctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcaattggattccaaggggaggagctggctctctctctctctctctctctctctctct 320

                                                                       
Query: 121 ctctctttctctctccttatgtcttctcttttcattgtttctctgttactgttccatttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 321 ctctctttctctctccttatgtcttctcttttcattgtttctctgttactgttccatcca 380

                                                                       
Query: 181 ttactaccagtatactgaaccatttttttcctttgagagaccgtgtctatagttgggtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactaccagtatactgaaccatttttttcctttgagagaccgtgtctatagttgggtgt 440

              
Query: 241 atc 243
           |||
Sbjct: 441 atc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)