XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAT
GTCTTTGGTTTCTTATATCAATTTTCTATAATTTTCAGAATAAAACTTGT
GTGCTGGGTGATCATACAGCACACATGTACTCTCTGGCACTTGGGAGATT
GAGGATGAATTATATTAAATATGAGGTTAATATGAACTATATAATAATAC
TTTTTTTCAAAAATAAGAAAAGAATCAAAAACAACAAAGGACTCCAAATT
TGTATCATTTGTTAGAGATGCACCTATGTATATTTTTTATTACACATGAA
ACTTTATTTTTTGATGTGTATATATGTAATGATAGTATAAGAACATGGAA
TTATATTCTGTATTTGTTGCTATTGTACATTTATTAAATACTTCTATCTA
TAAAGGCATATAAAAATAGGGGCACACTTGTATTTCTCTTTCCAATATGT
ATAATCTGTCTTTCTTTTTCTTGGTTTATGGTACTATCTAAAACTTATGA
CACTGTACTGAATAAGATTGATGAACATGGACATCTGTTTTTGCTTCTGA
TTTCCCTGGAAAGGGAATTTTGTCTATCAATATTTAGAATCATTCCAGCT
ACCAGTATGTTTGGCTTTGTTTTACAGACAATCTTTCTTAGATTGGGAAT
ACTCACTCTAATAGCTCAGATTATGAACCTGTAACAGTGTAACTCACATA
ATCAACTGAATAGGATTTAAGGTTTACTTAATATTACACGTCTCTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCACAATAGCAAACAATAAATAATTAAAAATACAGAACAG
TGCCATTCAACTCTTGACATAAAACAAAAGAGAACAGTAGAGAAACTATT
AAATAAAGTCAGTTTGATAATTAGTTTTGCCCATTTAATGCCTGTGTACT
TTGGATGTGTTAAGAAAAATCTTGAAGCCTGTGATTTTGTGAATGTTTAT
CAAATCGGTATAGCATGCAAAACTTAATCAAATATTAATTAGCTGAATAT
AATTTTAATGTATCCACTAGAGAACACTATTGTTAGAACTACGCCCCCCC
CCAACACACACCTTCCACAAAATTTTAGAATACATGGTGTCAAGCAACCA
AGTGAAGAAGCAATTTAAATCATCCATACAAAGTGACAGACAGGGAAAAC
TAAGTTGACAGCTAAGATCCCTAGGACTTTAGATTCTGAACTGGAATGTA
TCAAGGACAACAGCACACCAAGAAAACATGCATTAATGATTCTCCTCTTC
TTCACGTATACAGGCATTGTCTGCTTACTTTGTCAGGCATGATGCTCAAC
ACCAAGGAAGCAAAGCTGATGGTTAAGATATGGCTCCCCAGTCTCCCAAC
TGACCCCTCGAGTACCTAGGAACACATATGAGGACTGCCTCAAGTCAAAG
CATGAGGTTCC

Query= MSMg01no502_a14.b1 MSMg01no502_a14.b1 CHROMAT_FILE:
MSMg01no502_a14.b1 PHD_FILE: MSMg01no502_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:58 2005
         (619 letters)



>mm_chr4_66313927_66314945
          Length = 1019

 Score = 1135 bits (587), Expect = 0.0
 Identities = 608/615 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtatgtctttggtttcttatatcaattttctataattttcagaataaaacttg 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtaggtctttggtttcttatatcaattttctataattttcagaataaaacttg 264

                                                                       
Query: 65  tgtgctgggtgatcatacagcacacatgtactctctggcacttgggagattgaggatgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgctgggtgatcatacagcacacatgtactctctggcacttgggagattgaggatgaa 324

                                                                       
Query: 125 ttatattaaatatgaggttaatatgaactatataataatactttttttcaaaaataagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatattaaatatgaggttaatatgaactatataataatactttttttcaaaaataagaa 384

                                                                       
Query: 185 aagaatcaaaaacaacaaaggactccaaatttgtatcatttgttagagatgcacctatgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaatcaaaaacaacaaaggactccaaatttgtatcatttgttagagatgcacctatgt 444

                                                                       
Query: 245 atattttttattacacatgaaactttattttttgatgtgtatatatgtaatgatagtata 304
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 445 atattttttattacacatgaaactttaagttttgatgtgtatatatgtaatgatagtata 504

                                                                       
Query: 305 agaacatggaattatattctgtatttgttgctattgtacatttattaaatacttctatct 364
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaacatggaattaaattctgtatttgttgctattgtacatttattaaatacttctatct 564

                                                                       
Query: 365 ataaaggcatataaaaataggggcacacttgtatttctctttccaatatgtataatctgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataaaggcatataaaaataggggcacacttgtatttctctttccaatatgtataatctgt 624

                                                                       
Query: 425 ctttctttttcttggtttatggtactatctaaaacttatgacactgtactgaataagatt 484
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctttccttttcttggtttatggtactatctaaaacttatgacactgtactgaataagatt 684

                                                                       
Query: 485 gatgaacatggacatctgtttttgcttctgatttccctggaaagggaattttgtctatca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatgaacatggacatctgtttttgcttctgatttccctggaaagggaattttgtctatca 744

                                                                       
Query: 545 atatttagaatcattccagctaccagtatgtttggctttgttttacagacaatctttctt 604
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 atatttagaattattccagctaccagtatatttggctttgttttacagacaatctttctt 804

                          
Query: 605 agattgggaatactc 619
           |||||||||||||||
Sbjct: 805 agattgggaatactc 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no502_a14.g1 MSMg01no502_a14.g1 CHROMAT_FILE:
MSMg01no502_a14.g1 PHD_FILE: MSMg01no502_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:58 2005
         (651 letters)



>mm_chr4_66504950_66506000
          Length = 1051

 Score = 1236 bits (639), Expect = 0.0
 Identities = 648/651 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacaatagcaaacaataaataattaaaaatacagaacagtgccattcaactcttgacat 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 851 tcacaatagcaaacaataaataattaaaaatacagaacagtggcattcaactcttgacat 792

                                                                       
Query: 61  aaaacaaaagagaacagtagagaaactattaaataaagtcagtttgataattagttttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 791 aaaacaaaagagaacagtagagaaactattaaataaagtcagtttgatatttagttttgc 732

                                                                       
Query: 121 ccatttaatgcctgtgtactttggatgtgttaagaaaaatcttgaagcctgtgattttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ccatttaatgcctgtgtactttggatgtgttaagaaaaatcttgaagcctgtgattttgt 672

                                                                       
Query: 181 gaatgtttatcaaatcggtatagcatgcaaaacttaatcaaatattaattagctgaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gaatgtttatcaaatcggtatagcatgcaaaacttaatcaaatattaattagctgaatat 612

                                                                       
Query: 241 aattttaatgtatccactagagaacactattgttagaactacgcccccccccaacacaca 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gattttaatgtatccactagagaacactattgttagaactacgcccccccccaacacaca 552

                                                                       
Query: 301 ccttccacaaaattttagaatacatggtgtcaagcaaccaagtgaagaagcaatttaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccttccacaaaattttagaatacatggtgtcaagcaaccaagtgaagaagcaatttaaat 492

                                                                       
Query: 361 catccatacaaagtgacagacagggaaaactaagttgacagctaagatccctaggacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 catccatacaaagtgacagacagggaaaactaagttgacagctaagatccctaggacttt 432

                                                                       
Query: 421 agattctgaactggaatgtatcaaggacaacagcacaccaagaaaacatgcattaatgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agattctgaactggaatgtatcaaggacaacagcacaccaagaaaacatgcattaatgat 372

                                                                       
Query: 481 tctcctcttcttcacgtatacaggcattgtctgcttactttgtcaggcatgatgctcaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tctcctcttcttcacgtatacaggcattgtctgcttactttgtcaggcatgatgctcaac 312

                                                                       
Query: 541 accaaggaagcaaagctgatggttaagatatggctccccagtctcccaactgacccctcg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 accaaggaagcaaagctgatggttaagatatggctccccagtctcccaactgacccctcg 252

                                                              
Query: 601 agtacctaggaacacatatgaggactgcctcaagtcaaagcatgaggttcc 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agtacctaggaacacatatgaggactgcctcaagtcaaagcatgaggttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)