Query= MSMg01no502_g15.b1 MSMg01no502_g15.b1 CHROMAT_FILE:
MSMg01no502_g15.b1 PHD_FILE: MSMg01no502_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:26 2005
(653 letters)
>mm_chr4_77552062_77553114
Length = 1053
Score = 1247 bits (645), Expect = 0.0
Identities = 651/653 (99%)
Strand = Plus / Plus
Query: 1 caacagttttggacttaaatatccagactaaccataaatatttatatgtacagttaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacagttttggacttaaatatccagactaaccataaatatttatatgtacagttaagct 260
Query: 61 ttaatttaaaaatgccaagtctctttttaactctgtcaatgtcaattctttggttatgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatttaaaaatgccaagtctctttttaactctgtcaatgtcaattctttggttatgct 320
Query: 121 tgtaatccgaatttgcaatggatgttgtggagacattttaaaaaacaactcagtttaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaatccgaatttgcaatggatgttgtggagacattttaaaaaacaactcagtttaaaa 380
Query: 181 ttatacatcttgaaaaacaaatagaaaatagtaactaagatcaaaaactataaaattgca 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ttatacatcttgaaaaacaaatagaaaatagtacctaagatcaaaaactataaaattgca 440
Query: 241 cattggtctcacttgactcatgtgagatttcactagccaattcctcaaggacatgctaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattggtctcacttgactcatgtgagatttcactagccaattcctcaaggacatgctaca 500
Query: 301 cgttaaaatttcaatcaaaagacttattcgacctagaaacatgagcaatctgatgtataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgttaaaatttcaatcaaaagacttattcgacctagaaacatgagcaatctgatgtataa 560
Query: 361 tgtgctgggtctgagcctcagctgggaatactatgtggattacttaggtttctggcctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgctgggtctgagcctcagctgggaatactatgtggattacttaggtttctggcctga 620
Query: 421 caaaccttactacaatgtaaagagctgtttataaaaagagtagctacaagtgcgatagct 480
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 caaaccttactacaatgtaaagagctgtttataaaaagaatagctacaagtgcgatagct 680
Query: 481 ctttactaaaaatatgtagccctgaacgagttcaatccatgtaaaaattcttgcttgggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttactaaaaatatgtagccctgaacgagttcaatccatgtaaaaattcttgcttgggt 740
Query: 541 gtaaagccctgccaagtccccatctttagctgcacagctattggagttcatagttcctat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtaaagccctgccaagtccccatctttagctgcacagctattggagttcatagttcctat 800
Query: 601 ctaagacagttactttcctttgggtgttggctgccagtaacagatagctcata 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctaagacagttactttcctttgggtgttggctgccagtaacagatagctcata 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_g15.g1 MSMg01no502_g15.g1 CHROMAT_FILE:
MSMg01no502_g15.g1 PHD_FILE: MSMg01no502_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:26 2005
(618 letters)
>mm_chr4_77638503_77639517
Length = 1015
Score = 1160 bits (600), Expect = 0.0
Identities = 613/618 (99%), Gaps = 3/618 (0%)
Strand = Plus / Minus
Query: 1 tagattttttagtacatattttaaaagaataaactctcgtcagaataagactgcacttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tagattttttagtacatattttaaaagaataaactctcgtcagaataagactgcacttta 756
Query: 61 gccagcagcaaacacatttaacaagatcaagtacccgggccaaggtcatgatgaccaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gccagcagcaaacacatttaacaagatcaagtacccgggccaaggtcatgatgaccaaaa 696
Query: 121 ggcaagactcagaccctactgcctagagtagaaagcaagtttctaagcacaaagtcgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ggcaagactcagaccctactgcctagagtagaaagcaagtttctaagcacaaagtcgctg 636
Query: 181 tttttctcttttactcttcacaacacttgccaagcaaattcaatacaagacaatttattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tttttctcttttactcttcacaacacttgccaagcaaattcaatacaagacaatttattc 576
Query: 241 tgagctacaattataaattacttcaaaatgtgtgtgtttattggtgtctgtaataagcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgagctacaattataaattacttcaaaatgtgtgtgtttattggtgtctgtaataagcat 516
Query: 301 gatcatttcggcacaatcagctatttttttttttttggctaattatccatttagagattc 360
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 515 gatcatttcggcacaatcagcta--tttttttttttggctaattatccatttagagattc 458
Query: 361 agtccacaagtattcattaagaatctactacagtcaagcctctgcttgagtctacatatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agtccacaagtattcattaagaatctactacagtcaagcctctgcttgagtctacatatt 398
Query: 421 ttgccattcctcctgccaagaaatgcagacgtgcattccctcgtcaggaagcttatttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttgccattcctcctgccaagaaatgcagacgtgcattccctcgtcaggaagcttatttct 338
Query: 481 ttgtaatcattttagctcaggatgcacttccttcccacttaagaagtgaataattatagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttgtaatcattttagctcaggatgcacttccttcccacttaagaagtgaataattatagt 278
Query: 541 ggagtccaggttctatatatagctaacaaccaagagcatttggatcacacttttctgttt 600
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 277 ggagtccaggttctatatatagctaacagccaagagcatttggatcgcacttttctgttt 218
Query: 601 ccattttccctttcctta 618
||| ||||||||||||||
Sbjct: 217 cca-tttccctttcctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1015
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1005
Effective search space: 611040
Effective search space used: 611040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
