BAC Information

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BAC

Clone NameMSMg01-503A06
Chromosome4 (Build37)
Map Location 107,707,252 - 107,707,770
singlet/doubletsinglet
Overlap genenone
Upstream geneSsbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn
Downstream geneScp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503A06.T7 (MSMg01no503_a06.b1)MSMg01-503A06.TJ (MSMg01no503_a06.g1)
ACCAG578232AG578233
length949712
length of high quality
(start - end)		---515 (87 - 601)
definitionCHROMAT_FILE: MSMg01no503_a06.b1 PHD_FILE: MSMg01no503_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:11 2005CHROMAT_FILE: MSMg01no503_a06.g1 PHD_FILE: MSMg01no503_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAGGGCCNCCNCCCCNCCCCCCCCCCCCNNCNCNNNCCCCCCNNCNNC
NNNCCCCCCCCCCCCCCNCNCCCCCCCCCCCCCCCCTCCNCCCCCCCCCC
CCCCCCNNCCCCCCCCCCCNNCCCCNCCCCCCCCCCCNCCCCCCCCCCCN
NNNNCCCCCCCCCCCCCCCCCCCCCCCCCCNNNCNNCCCCCCCCCCCCCC
CCCCCCCNNCCCCCCTTNCCCCNNNTCCCCCCCCNNCCCCCCCCCCCCCC
CCCCNCCCNCNNCNNCCCCCCCCCCCCCNCNCCCCCCCCNTNTCCTTTTN
CCCCCNCNCCCCCCCCCCCNNNNCCCCCCCCCCCCCCCCCCCCCCCCCCC
CTCCCCCCCCCCCCCCNNCCCCCCCCNNNNNCCNCCCCCCNCCCCCCCCC
CCCCTCCCCCTCCCTCCCCCCCCCCCCCCCNNNNCCCTCCCCTTTCCCCC
CCNCCCCCCCNCCNCCCCCCCCCCCCCCNNCCCNCCCNCCCCCCCCCAAA
ACAAAAATTTNNACCNCNCCNCCCCCCCTTTAAAANNAACNNCAAACTTT
CCNNCNNAAATTAACTTTCATNCCNCAGGCNTTACCCCGNNGGGGGNAAT
TTTTCCNNNGGGGCCCCTTTTTCTNNATAATGGAAAACCTTGGNAATTTG
GTCGGCTTCAAATTCGTTTGGCACCGCATTTTTTTTTCACACGGTNTTCG
GGCAAATTCTCAAACCCTTTCCCCCCCCCTTTAATNCTACACCCGGGGTG
GGCAACGCCCCAAAAGAGCCCTCTTTTATNTTAAGGGACAACACTTGCGC
CGTGGAAGCGCACTTTATGTTTAATCTCACCCTGCAGGGATTTTTGTCTT
TGTTATCGTGGCNTATGCTTTTTCCGGTNCCANNGNNNNTTTTNNCNGCC
TNCTCGAGGCTGNTTGTATAAAAAACTAGATAAGTATCCCCGTTATTTG

TTGTTTTTCTCCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAATTAAGCTAG
ACTAACTACCAGCAAGCCCCATAGATCCTGTCTCTACCCAACACCTCCAA
TTTCTGAGACTATTGGTACACACCATTATGCTTTATTTTTTAGATATGGG
TGCTGGGAATTGAACTCAGGTCTTCCTGTAAGCACTTTACCGACTGAGCC
ATCTCTGCAGTCCCAAGTCTTGGCCTCTGTCAAAAGCCTTCAGTCAGATG
TGAGAGTTCCGGGCCTATAAGCTTTCTTACTTGAGAAGTAGTAGGCAAAC
AGATCAAAAGCTCAAGATATGGGCAACTTGATGAGGTCCTGTCTCAAAAT
TTAAGTAAATAAACAATAGAGGGCTGAGGATGGGGCTTAGCAGGCGATCG
TTTGCCTGGTATGCACAGTGACCTGAGTTCAATCCCCAGTACTAATGATA
AAACAGCAGCAACAAGAAAACCTTTAGAGAGGCCCTGCTGACCCAAACAG
CACTCTGTCTGATCAAGCTCCTGTCGGCCGCTCAGCACTCATGACTCTGC
TCGTGGATGAGGAAAGGTCTTGAGTCCTGAGCTCAAGGGAGGAGGAATTC
CTTTCTTCTCTGACGGTAAAGAATGATAAATAGCGTGCTGTTCCTTTTCT
CTCCTTTTCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_a06.g1 MSMg01no503_a06.g1 CHROMAT_FILE:
MSMg01no503_a06.g1 PHD_FILE: MSMg01no503_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:11 2005
         (515 letters)



>mm_chr4_107707063_107707977
          Length = 915

 Score =  915 bits (473), Expect = 0.0
 Identities = 506/519 (97%), Gaps = 4/519 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaattaagctagactaactaccagcaagccccatagatcctgtctctacccaacacct 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 708 accaattaagctagactaactgccagcaagccccatagatcctgtctctacccaacacct 649

                                                                       
Query: 61  ccaatttctgagactattggtacacaccattatgctttattttttagatatgggtgctgg 120
           || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 648 cccatttctgagactataggtacacaccattaagctttattttttagatatgggtgctgg 589

                                                                       
Query: 121 gaattgaactcaggtcttcctgtaagcactttaccgactgagccatctctgcagtcccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaattgaactcaggtcttcctgtaagcactttaccgactgagccatctctgcagtcccaa 529

                                                                       
Query: 181 gtcttggcctctgtcaaaagccttcagtcagatgtgagagttccgggcctataagctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gtcttggcctctgtcaaaagccttcagtcagatgtgagagttccgggcctataagctttc 469

                                                                       
Query: 241 ttacttgagaagtagtaggcaaacagatcaaaagctcaagatatgggcaacttgatgagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttacttgagaagtagtaggcaaacagatcaaaagctcaagatatgggcaacttgatgagg 409

                                                                       
Query: 301 tcctgtctcaaaatttaagtaaataaacaa----tagagggctgaggatggggcttagca 356
           |||||||||||||||||| |||||||||||    ||||||||||||||||||||||||||
Sbjct: 408 tcctgtctcaaaatttaaataaataaacaaataatagagggctgaggatggggcttagca 349

                                                                       
Query: 357 ggcgatcgtttgcctggtatgcacagtgacctgagttcaatccccagtactaatgataaa 416
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggcgatcgtttgcctggtatgcatagtgacctgagttcaatccccagtactaatgataaa 289

                                                                       
Query: 417 acagcagcaacaagaaaacctttagagaggccctgctgacccaaacagcactctgtctga 476
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 288 acagcagcaacaagaaaacctttagagaggccccgctgacccaaacagcactctgtctga 229

                                                  
Query: 477 tcaagctcctgtcggccgctcagcactcatgactctgct 515
           ||||||||||||||||| ||||||||||| |||||||||
Sbjct: 228 tcaagctcctgtcggccactcagcactcaggactctgct 190


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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