Query= MSMg01no503_a11.b1 MSMg01no503_a11.b1 CHROMAT_FILE:
MSMg01no503_a11.b1 PHD_FILE: MSMg01no503_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:12 2005
(569 letters)
>mm_chr4_55935946_55936914
Length = 969
Score = 1060 bits (548), Expect = 0.0
Identities = 560/564 (99%)
Strand = Plus / Plus
Query: 1 ggtagcatgctagttgtcaggaattgtattaagaaatggaggggacaggcaactttaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtagcatgctagttgtcaggaattgtattaagaaatggaggggacaggcaactttaact 260
Query: 61 gggtaggtcaggagaggagaggaagaaaactgtgtcattgtcttaaccaaacattccacc 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gggtaggtcaggagaggagaggaagaaaattgtgtcattgtcttaaccaaacattccacc 320
Query: 121 tagctgcctgtcgccaggctgtatcgtgcagacaggtaaacaaatagtgatacatagtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagctgcctgtcgccaggctgtatcgtgcagacaggtaaacaaatagtgatacatagtgt 380
Query: 181 ggcacttgctgcaataatctaagtgccaaagatttatgggactgtagaacacagttccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcacttgctgcaataatctaagtgccaaagatttatgggactgtagaacacagttccta 440
Query: 241 taagggccaaccacaaatattggattgaagcctctgtactttgggacaaagcaggagagg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagggccgaccacaaatattggattgaagcctctgtactttgggacaaagcaggagagg 500
Query: 301 gcctttgcttttctctgaaggcgtctggaggacttccagaatcgttgggattcaacaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctttgcttttctctgaaggcgtctggaggacttccagaatcgttgggattcaacaggt 560
Query: 361 cgtagcataaagaagaatcaaagaaaatactatccagcaggggcttgccagggctagagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgtagcataaagaagaatcaaagaaaatactatccagcaggggcttgccagggctagagt 620
Query: 421 gacaagaatatgtgtgtttggtaatgatcgaaagattgccatgcttataggagacaggat 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gacaagaatatgtgtgtttggtaatgatcgaaagattgccatgcttagaggagacaggat 680
Query: 481 ggaagaggatgagggaaggatgagctggagggagaggaacaggtccacagggcctctgtt 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggatgaggatgagggaaggatgagctggagggagaggaacaggtccacagggcctctgtt 740
Query: 541 gacttggtaaagagtgtgactatt 564
||||||||||||||||||||||||
Sbjct: 741 gacttggtaaagagtgtgactatt 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_a11.g1 MSMg01no503_a11.g1 CHROMAT_FILE:
MSMg01no503_a11.g1 PHD_FILE: MSMg01no503_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:12 2005
(608 letters)
>mm_chr4_56002524_56003531
Length = 1008
Score = 1106 bits (572), Expect = 0.0
Identities = 598/608 (98%), Gaps = 3/608 (0%)
Strand = Plus / Minus
Query: 1 gagtgtgtctggaccacccaccacacgaggatatctaaactggactttggccagttcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gagtgtgtctggaccacccaccacacgaggatatctaaactggactttggccagttcacc 585
Query: 61 ttcaggaacttctgttcagaaagtagcatgacttcttggagtagcaaggtaaaataaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ttcaggaacttctgttcagaaagtagcatgacttcttggagtagcaaggtaaaataaaat 525
Query: 121 caagtgtggagcatcgttttagtaataccagatggctctctgggtgtcacatgcttagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 caagtgtggagcatcgttttagtaataccagatggctctctgggtgtcacatgcttagag 465
Query: 181 cagagtgtagaacgaattacctatcagcagggtttcctatagtgagcagcataggtgttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cagagtgtagaacgaattacctatcagcagggtttcctatagtgagcagcataggtgttc 405
Query: 241 tagcacattctttcatccatttggcctaaggaactacgtaagacacccataatgctggct 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 404 tagcacattctttcatccatttggcctaaggaactatgtaagacacccataatgctggct 345
Query: 301 caaaaagcaagcataattgtttctaaaggaatcgtcccactgttccaaaggggcaccgaa 360
|||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||
Sbjct: 344 caaaaagcaagcataattgtttttaagggaatcttcccactgttccaaaggggcaccgaa 285
Query: 361 gataatgcttgtcggcaaagaagagaatcaaaagcagtaaagtagaagccagaagctaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gataatgcttgtcggcaaagaagagaatcaaaagcagtaaagtagaagccagaagctaca 225
Query: 421 tgagaatgaagaaggaaagattatcgttgaatgctcactccatcacttatggggtccatg 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 224 tgagaatgaagaaggaaagattattgttgaatgctcactccatcacttatggggtccatg 165
Query: 481 attgacgataaattacttttctaagccttagtttcttcagtcataggatggaaatagtat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 attgacgataaattacttttctaagccttagtttcttcagtcataggatggaaatagtat 105
Query: 541 tcttgtctatatcatagtgttgtaacaagaatgaaagacgatctgtcatgcagcatctag 600
||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||
Sbjct: 104 tcttgtctatatcatag---tgtaacaagaatgaaagatgatctgtcatgcagaatctag 48
Query: 601 ctgaatag 608
||||||||
Sbjct: 47 ctgaatag 40
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
