BAC Information

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BAC

Clone NameMSMg01-503B10
Chromosome4 (Build37)
Map Location 3,730,332 - 3,730,574
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039124, LOC100039141, EG666464, LOC100039044, LOC631371, LOC666513, Tmem68, Tgs1, Lyn, LOC621858
Downstream geneRps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1, A830012C17Rik, LOC100039297, LOC622019, Impad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503B10.T7 (MSMg01no503_b10.b1)MSMg01-503B10.TJ (MSMg01no503_b10.g1)
ACCAG578288AG578289
length715710
length of high quality
(start - end)
477 (81 - 557)240 (72 - 311)
definitionCHROMAT_FILE: MSMg01no503_b10.b1 PHD_FILE: MSMg01no503_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:16 2005CHROMAT_FILE: MSMg01no503_b10.g1 PHD_FILE: MSMg01no503_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:16 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CAATTTTTTTTCCTTAACTTGTGGCCGCTATCGAACAGTATATTTCCAAA
TCCGCGGAATTCCTGATCTTTTCCCACGATTATCGTGAATGGGTGTTGAA
TCTTGTCAAATGCTTTCTCTGAATCTAACGAGATGATCATGTTGTTTTTG
TCTTAGAGTTTGTTTATATTATGGATTACGTTGATGGATTTCCGTATATT
AAACTATCCCTGCACCCTGGAATAAAACCTACTTGGTCAGGATGGATGAT
TGCTTCAATATGTTCTTGGATTCAGTTAGCGAGAATTTTATTGAGTATTT
TTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTT
GGATCTTTCTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGA
GTTGGGAAGACTACCTTCTACTTCTATTTTGTGGAATAGTTTGTGCAGAA
CTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCA
TCTGGTCCTGGGTTTTTTTTGGCTGAGAGACTATTGATGACTGTTTCTAT
TTCTTTAGGGGATATGGGACTGTTTATAACGTTAACTTGATCCTGACTTA
ACTTTGGTACCTGGCATCTGTCTAGAAATTTGTCCATTTTGGCCAGCGTT
CTCCAGCTTTCGTTGATTACATTCCTTTTGCACAACGATCTGTATGGTGT
TTTGGATTTTCTTCC
GCTTTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGCTACTGCTGCTCCTGCTTAGAAAAAA
CTCTCCCTGATGTTCGTTGTTATCTATAATCCTTGAAGATTTTTCTTGTT
TCATTGTTTGTTTATGCAGTGCTAGATTGAACCCAGGCTTTGTATGTGCC
GTATCAATTCTTGGCCCCTGAACCATACCTGCAGCCCAAGAGTGTATTGT
TCTATTGCTGAAGCTGTTATTTAAACTCATTTCTTTCTTTTAAAGAAACC
AGAATTTGGGAACCATATATAGGAGTGAATTTATTCTCAACTATGAGAAT
AAATAAGTATATAAATAAAGTAAGTAAAGACACTAGAATCTCACTCACTC
ATTTATTAAATCAGTCATATTTACTAATCGTCTGCTGTATAGCAGGCACC
ATGTTACGTGCATGCACAGGGTAGCTGAAATGTGAAGATTATCTGGGCAT
AGGCCTCACCCTCCCAACACGCCCTTAGACCTTGTCATCATCTTTCAACA
AAGGGCCATGTGTGAGCATCAGTGGTGAGGAGACATAGACTCAGCTCCAC
GCTATCACACTCAGCAGCATGGCGAGAAGCTCCCATATCCTCTCAAGAAC
CTCAACTCATGGCCAAACTGAGACGTACAGCTTTTGACTCTAAATAAAAA
AACCCCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_b10.g1 MSMg01no503_b10.g1 CHROMAT_FILE:
MSMg01no503_b10.g1 PHD_FILE: MSMg01no503_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:16 2005
         (240 letters)



>mm_chr4_3730131_3730774
          Length = 644

 Score =  410 bits (212), Expect = e-119
 Identities = 235/244 (96%), Gaps = 6/244 (2%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgctactgctgctcctgcttagaaa-aaactctccctgatgttcgttgttatctataatc 60
           ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 202 tgctactgctgctgctgcttagaaacaaactctccctgatgttcgttgttatctataatc 261

                                                                       
Query: 61  cttgaagatttttcttgtttcattgtt---tgtttatgcagtgctagattgaacccagg- 116
           |||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||| 
Sbjct: 262 cttgaagacttttcttgtttcattgttgtttgtttatgcagtgctagattgaacccagga 321

                                                                       
Query: 117 ctttgtatgtgccgtatcaattcttggcccctgaaccatacctgcagcccaagagtgtat 176
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctt-gtacgtgccgtatcaattcttggcccctgaaccatacctgcagcccaagagtgtat 380

                                                                       
Query: 177 tgttctattgctgaagctgttatttaaactcatttctttcttttaaagaaaccagaattt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttctattgctgaagctgttatttaaactcatttctttcttttaaagaaaccagaattt 440

               
Query: 237 ggga 240
           ||||
Sbjct: 441 ggga 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 644
Length adjustment: 9
Effective length of query: 231
Effective length of database: 635
Effective search space:   146685
Effective search space used:   146685
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)