Query= MSMg01no503_b18.b1 MSMg01no503_b18.b1 CHROMAT_FILE:
MSMg01no503_b18.b1 PHD_FILE: MSMg01no503_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:18 2005
(464 letters)
>mm_chr4_57216832_57217695
Length = 864
Score = 866 bits (448), Expect = 0.0
Identities = 460/464 (99%)
Strand = Plus / Plus
Query: 1 gacagtctctcacgatgagggggtaggcaagatgggaaccggggaggtaagaacagatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacagtctctcacgatgagggggtaggcaagatgggaaccggggaggtaagaacagatgc 260
Query: 61 taggattagcaggcacgcttcgaagcatcctctcagtgcctcagagaaccagcattcagg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggattagcaggcacccttcgaagcatcctctcagtgcctcagagaaccagcattcagg 320
Query: 121 aagagatttctgctgtcccttgggcactacagttttctatcctgatttgtgggatgagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagatttctgctgtcccttgggcactacagttttctatcctgatttgtgggatgagaa 380
Query: 181 gagactctggctaatctgtgagtgacaagaagctgggagtcaaggctacagcatagaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 gagactctggctaatctgtgagtgacaagaagctgggagtcaaggctacagcagagaagc 440
Query: 241 gaggcatctgaaagcgctaaactccaatgatgatgatgatgacgtttgggggacactgga 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gaggcatctgaaagcgctaaactccaacgatgatgatgatgacgtttgggggacactgga 500
Query: 301 aacccgtagtcctctgagctcattatatatactttccagctttccccagtcctcccaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacccgtagtcctctgagctcattatatatactttccagctttccccagtcctcccaatg 560
Query: 361 tggtgggcgctgttaccatctctactacacattcaagaaagtgattcagacagcctaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggtgggcgctgttaccatctctactacacattcaagaaagtgattcagacagcctaata 620
Query: 421 acttactcaggaggaactatgttttcagcccagtccagcccagt 464
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 acttactcaggaggaactatgttgtcagcccagtccagcccagt 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_b18.g1 MSMg01no503_b18.g1 CHROMAT_FILE:
MSMg01no503_b18.g1 PHD_FILE: MSMg01no503_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:18 2005
(531 letters)
>mm_chr4_57402345_57403275
Length = 931
Score = 992 bits (513), Expect = 0.0
Identities = 527/534 (98%), Gaps = 4/534 (0%)
Strand = Plus / Minus
Query: 1 ttttcataagcattctctgaccaggaaaggtccactcttcagtcatgccatgttctagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttttcataagcattctctgaccaggaaaggtccactcttcagtcatgccatgttctagaa 588
Query: 61 agttcctgtccaattagaactcttggtctctgcctctaattgctagtcttagtagcaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agttcctgtccaattagaactcttggtctctgcctctaattgctagtcttagtagcaaat 528
Query: 121 gagaaccagaaactccatagagtcccagggtacaatggacaatagcaggctaacctctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gagaaccagaaactccatagagtcccagggtacaatggacaatagcaggctaacctctgg 468
Query: 181 gctacagtgaccatctcaagtctgtgcatgtcctaaattagccaagggtattgcacattc 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 467 gctacagtgaccatctcaagtctgtgcatgtcctaaatgagccaagggtattgcacattc 408
Query: 241 tgatttgatcctcatgtaactcttcacaattcacagttttccattggctagaactacctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgatttgatcctcatgtaactcttcacaattcacagttttccattggctagaactacctg 348
Query: 301 ggctttaaaatctatgttgcaaatggccctccgtggatttggtcatccaagagtctcggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ggctttaaaatctatgttgcaaatggccctccgtggatttggtcatccaagagtctcggg 288
Query: 361 ttcaccgtcctgatggaactgaaatgtctgcaggcatcagcgagcttctcccatgccttc 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 287 ttcaccgtcctgatggaactgaaatgtctgcatgcatcagcgagcttctcccatgccttc 228
Query: 421 ctatcagctgctttcattctttttgttctttctctcttccttccttccttccttccttcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ctatcagctgctttcattctttttgttctttctctcttccttccttccttccttccttcc 168
Query: 481 ttccttccttcctt----tctttcattacntgtgtgtgtgtgtgtgtgtgtgtg 530
|||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 167 ttccttccttccttcctttctttcattacttgtgtgtgtgtgtgtgtgtgtgtg 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
