Query= MSMg01no503_d18.b1 MSMg01no503_d18.b1 CHROMAT_FILE:
MSMg01no503_d18.b1 PHD_FILE: MSMg01no503_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:27 2005
(581 letters)
>mm_chr4_94875252_94876231
Length = 980
Score = 1036 bits (536), Expect = 0.0
Identities = 570/582 (97%), Gaps = 3/582 (0%)
Strand = Plus / Plus
Query: 1 tttgaaacctgtcgcagaaactatacacagaaactatacggcttcttctaagccctcctt 60
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 201 tttgaaacctgtcgcagaaactacacacagaaactatatggcttcttctaagccctcctt 260
Query: 61 ctaccctgcagggcaagttcttgggcctcaaggctcactctctctccttagggactttag 120
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 261 ctaccctgcagggcaagttcttgggcctcaaggctctctctctctctttagggactttag 320
Query: 121 ccacgcttcctgaggcctggcatatcacagaacttgctggaagtcacttgtgaggcaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacgcttcctgaggcctggcatatcacagaacttgctggaagtcacttgtgaggcaagc 380
Query: 181 ccttggcaagcagcactgagtatgacattatctgctgtgacgaaggtctaatatcagatc 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ccttggcaagcagcactgagtatgacattatctgctgtgacggaggtctaatatcagatc 440
Query: 241 atttacgcgaccttgtccaacaaggacagaagtaaatatcttccacgcacatgccatcca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttacgcgaccttgtccaacaaggacagaagtaaatatcttccacgcacatgccatccg 500
Query: 301 atccaggcaacagcccagggaggaggactgctgtttctcctcacactgtgcaagtggagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccaggcaacagcccagggaggaggactgctgtttctcctcacactgtgcaagtggagg 560
Query: 361 tgcagaaaggaggggccactggagcctaacttccacccaccctcagctgttttacacctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcagaaaggaggggccactggagcctaacttccacccaccctcagctgttttacacctg 620
Query: 421 cgccctcagggaggctgcaactcggtttttttttatgaggttaatgggaaaatgtgctgt 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 agccctcagggaggctgcaactcggttttttt--atgaggttaatgggaaaatgtgctgt 678
Query: 481 gtgatacg-gccccggcagaagaggaaacagcccaggggtagattttagcaagaaagaac 539
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtgatacgagccccagcagaagaggaaacagcccaggggtagattttagcaagaaagaac 738
Query: 540 tgaaaacttgagaatgatggtagactgccacaagtcccttgc 581
||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgaaagcttgagaatgatggtagactgccacaagtcccttgc 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 980
Length adjustment: 10
Effective length of query: 571
Effective length of database: 970
Effective search space: 553870
Effective search space used: 553870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_d18.g1 MSMg01no503_d18.g1 CHROMAT_FILE:
MSMg01no503_d18.g1 PHD_FILE: MSMg01no503_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:27 2005
(540 letters)
>mm_chr4_94944632_94945568
Length = 937
Score = 920 bits (476), Expect = 0.0
Identities = 518/540 (95%), Gaps = 15/540 (2%)
Strand = Plus / Minus
Query: 1 ccaccctgtgtgctcagaagggaagcccacgcttccatcccaggctgctggcttcggtaa 60
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 682 ccaccctgtgtgctcagaaggggagcccacgcttccatcccagactgctggcttcggtaa 623
Query: 61 acagtctcagtggaaaggtcaccactgacctctgagctgagggatttttctcagctcaca 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 622 acagtctcagtggaaaggtcaccactgacttctgagctgagggatttttctcagctcaca 563
Query: 121 cctcaggtttctggacagagtggccttgtattgtttactgagaacttgctccactaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cctcaggtttctggacagagtggccttgtattgtttactgagaacttgctccactaacag 503
Query: 181 tactgagccctgagctgcaagacacatagagcaagcaccaggagcaggcaaggcttcatg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cactgagccctgagctgcaagacacatagagcaagcaccaggagcaggcaaggcttcatg 443
Query: 241 ctggctaccggtttagtgatgtccctgcctcagacctgtatgctttattttctgtttttt 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 442 ctggcaaccggtttagtgatgtccctgcctcagacctgtatgctttattttctg---ttt 386
Query: 301 ttttttaaggaatgtgaacttactccattgagtgattttactccattgacccctacttca 360
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttttaaaggagtgtgaacttactccattgagtgattttactccattgacccctacttca 326
Query: 361 ctctgagtcacataaagacatctacactttgcataatctgcataccggctcagtacgatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctgagtcacataaagacatctacactttgcataatctgcataccggctcagtacgatt 266
Query: 421 aaacaccattttgtaccctcgtaagacaggaagctgtggttcattgcttgcagcacaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacaccattttgtaccctcgtaagacaggaagctgtggttcattgcttgcagcacaaac 206
Query: 481 ctgatactggagtcaatgagttggggacggtaggactcaggtaaacgtccactttctatt 540
||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ctgat----gagtc--------ggggacggtaggactcaggtaaacgtccactttctatt 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 937
Length adjustment: 10
Effective length of query: 530
Effective length of database: 927
Effective search space: 491310
Effective search space used: 491310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
