CCTTTCTCTNTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGT
TCCAGGATCCGCGGAATTCTAAAGCATTCCGATGTAAAGGATGTTCAAGT
AGCTGAATAAGCTTTAAATCATTGCATAAATTAAGTGGATGATAAAAGCA
GAGGTTTCTACATGGGCAGAGGAGAAATGGAAGAAAGGCAAGCAAGAGTT
CTGTCAGTGTACTGGGCATTTGACCAAGTGGAAATGTCAGATGTGCAGAG
TGAGCAAGCAAATGAAAAATAACCAGATTTTACTTTTCAACACTTCTATG
GGGCGCTGTATTAAGCAGCATGATGATAATTGGCAGATGGACAGGAAGTA
TGGCAGTCATTTGTATTCTTTAAAAAGGAAATAGAAAAGTATTTTTGTAT
TTAAATCAATGGACAAGTATACCTTTCCCAAATTATACAGAAAAGTTCAT
GTAAACTAGTCTACAGTAAAATAATAATAAAGGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCTTTAAAA
TAGTGGAAAGACATATGAGCTACTGAATTTTACTAAGCAGCCACTGTGAA
AGGGACTTATTTAATGAAGCTTGTTTTAAATTGTCCATCTTTGTAAGGAT
GTATGCACTTCTCAGAGTCCTTCTGCGACTGGGTTTTGTTTTTGTGAACA
TAGTGAATAGGATTTAAACTTCTTAGCTTTTTTTTTTCTTTTCAAA

NNTTTTTTTCCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTAAATGTCTATAGA
TCAGATCTTCAATAGGTACAAACTTTCCACATTCAAAGAAAGAATNTNCN
TTATANGTAAAAAANNANCNNNNNNCAAAAGTGGAGAAGCGAGAGTGGGG
ACTGGGGATTGGAATAAACTTTGGTNCNATCCNAGAGGNTTCCATAAGGA
GGGGAGTGAAATTNTTCTNNNCTGGAATTTTTTTTTTAAAAAAGGTGAAT
AGGTGTGGATATTTTTTGGAAAGGGGGGAAAAAANNNNNTTAAAAGTCAA
AGAAAAAAAGAAGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNN
NCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNTNNT
TTTNNNNNNTNNTTNNTTNNNNCTTCTNCTTCCCTTTTTTCCTTTTTTCC
CCCTTTCCCCCTTTCTTTTTTCTCCCCTTCTCCCCCCCNTCCTTTTTTCT
TTCTTTCTNCCCCCCCTTCCNCCNNCCTCCTTTCCCCCCCTTTTCTTTTT
TGGTGGGGTGGTGTGTGGA

Query= MSMg01no503_e22.b1 MSMg01no503_e22.b1 CHROMAT_FILE:
MSMg01no503_e22.b1 PHD_FILE: MSMg01no503_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:33 2005
         (589 letters)



>mm_chr4_22808261_22809249
          Length = 989

 Score = 1091 bits (564), Expect = 0.0
 Identities = 579/584 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctaaagcattccgatgtaaaggatgttcaagtagctgaataagctttaaatcatt 65
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaattctaaagcaggctgatgtaaaggatgttcaagtagctgaataagctttaaatcatt 565

                                                                       
Query: 66  gcataaattaagtggatgataaaagcagaggtttctacatgggcagaggagaaatggaag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcataaattaagtggatgataaaagcagaggtttctacatgggcagaggagaaatggaag 505

                                                                       
Query: 126 aaaggcaagcaagagttctgtcagtgtactgggcatttgaccaagtggaaatgtcagatg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaggcaagcaagagttctgtcagtgtactgggcatttgaccaagtggaaatgtcagatg 445

                                                                       
Query: 186 tgcagagtgagcaagcaaatgaaaaataaccagattttacttttcaacacttctatgggg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgcagagtgagcaagcaaatgaaaaataaccagattttacttttcaacacttctatgggg 385

                                                                       
Query: 246 cgctgtattaagcagcatgatgataattggcagatggacaggaagtatggcagtcatttg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgctgtattaagcagcatgatgataattggcagatggacaggaagtatggcagtcatttg 325

                                                                       
Query: 306 tattctttaaaaaggaaatagaaaagtatttttgtatttaaatcaatggacaagtatacc 365
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 tattctttaaagaggaaatagaaaagtacttttgtatttaaatcaatggacaagtatacc 265

                                                                       
Query: 366 tttcccaaattatacagaaaagttcatgtaaactagtctacagtaaaataataataaagg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttcccaaattatacagaaaagttcatgtaaactagtctacagtaaaataataataaagg 205

                                                                       
Query: 426 agagagagagagagagagagagagagagagagagagagagagagagagagagagagagcc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 agagagagagagagagagagagagagagagagagagagagagagagagagagagagagcc 145

                                                                       
Query: 486 tttaaaatagtggaaagacatatgagctactgaattttactaagcagccactgtgaaagg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 tttaaaatagtggaaagacatatgagctactgaattttactaagcagccactgtgaaagg 85

                                                       
Query: 546 gacttatttaatgaagcttgttttaaattgtccatctttgtaag 589
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  gacttatttaatgaagcttgttttaaattgtccatctttgtaag 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)