BAC Information

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BAC

Clone NameMSMg01-503G23
Chromosome4 (Build37)
Map Location 63,432,758 - 63,433,168
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15
Downstream geneTnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503G23.T7 (MSMg01no503_g23.b1)MSMg01-503G23.TJ (MSMg01no503_g23.g1)
ACCAG578552AG578553
length731731
length of high quality
(start - end)
511 (84 - 594)590 (83 - 672)
definitionCHROMAT_FILE: MSMg01no503_g23.b1 PHD_FILE: MSMg01no503_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:42 2005CHROMAT_FILE: MSMg01no503_g23.g1 PHD_FILE: MSMg01no503_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTTCCTTTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCG
TAAATCCGCGGAATTCTCATGTGTCCCCAGCAGTCACCTGTGACCCCAGC
ATTCACCTGTGATCCCAGCATTCACCTGTGACCCCAGCATTCACCTGTGA
CCCCAACATTCACCTGTGACCCCAGCATTCACCTGTGACCCCAGCATTCA
CCTGTGACCCCAGCATTCACCTGTGACCCCAGCATTCACCTGTGATCCCA
GCATTCACCTGTGACCCCAACATTCACCTGTGACCCCAGCATTCATCTGT
GATCCCAGCATTCTCCTGTGACCCCTATATTCACCTGTGATCCCAGCATT
CTCCTGTGACCCCAGCATTCACCTGTGACCCCAGCATTCACCTGTGACCC
CAGCATTCACCTGTGACCACAGCATTCACCTGTGACCCCAGCATTCACCT
GTGACCCCAGCAGTCACCTGTGACCCCAGCAGTCACCTGTGATCCCAGCA
TTCACCTGTGATCCCAGCATTCACCTGTGACCCCAGCATTCACCTGTGAC
CCCAGCATTCTCCTGTGACCCCAGCATTCTCCTGTGATCCCAGCAGTCAC
CTGTGACCCCAGCATTCACCTGTGACCCCAGCATTCTCCTGTGACCCCAG
CATTCACCTGCGACCCCAGTATTCACCTGTGACCCCAGCCATCACCTGTG
ACCCCAGCATTCACCTGTGACCCCAGCATTC
TTATTNTTTCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGACCATACTTTGAAA
GACACAGCTTTCTCTGGCTAAGACAGGTTGAAATCGCGTTGGTGGGTGGA
CGTTCAGTATCAAAAGGATTCAGCACAGACATGCTATGTGAGAGGTGGGC
ATCTTCTTGTGACAGGAGGGAGGCTAGCAAAGAGTGAGCAGCTGCTTAGT
GAGTATGCAGGGAGGTGGTGAGGAGACCCAACACAATGGCTTTTGTGTTA
GTCCAACCTGTACTACTATAACAAAATGCCTGGGACTAGCTAGTGTATAA
AGAGATTTATTTCTGAAAATTCTGTACATTAAGAAGCACCTGCAAGTTCC
TTTATTTTGTGAAGGATGTTCTCTGCTTAAAAGATGGTACTTCTTCCAGA
AGAGATGATCATTGTGTCCTTACATGGTGAAAAGCTGAAAGGCAGAAGGA
GTTGAAACTCTGTGAGACCTCTGTGGCATGGCCTGCACCCACTCACAAGG
GAGGTCTCAAGATTTAATCACATCTTAAATAATCTTAACATTACCACATT
GACCTTTGAGATTCTGTAGGAGGGGACACCAGCAGTCAAACCATAGCAGC
TTCCAATACTCTTCCACATCTGAGGTCATTTTGCCACGATTGAAATCTCC
AGCCTCGGGGCACATTCCTCAAGTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_g23.g1 MSMg01no503_g23.g1 CHROMAT_FILE:
MSMg01no503_g23.g1 PHD_FILE: MSMg01no503_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:42 2005
         (590 letters)



>mm_chr4_63432758_63433747
          Length = 990

 Score =  764 bits (395), Expect = 0.0
 Identities = 407/411 (99%), Gaps = 1/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaccatactttgaaagacacagctttctctggctaagacaggttgaaatcgcgttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttagaccatactttgaaagacacagctttctctggctaagacaggttgaaatcgcgttgg 352

                                                                       
Query: 61  tgggtggacgttcagtatcaaaaggattcagcacagacatgctatgtgagaggtgggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgggtggacgttcagtatcaaaaggattcagcacagacatgctatgtgagaggtgggcat 292

                                                                       
Query: 121 cttcttgtgacaggagggaggctagcaaagagtgagcagctgcttagtgagtatgcaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cttcttgtgacaggagggaggctagcaaagagtgagcagctgcttagtgagtatgcaggg 232

                                                                       
Query: 181 aggtggtgaggagacccaacacaatggcttttgtgttagtccaacctgtactactataac 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 231 aggtggtgaggagacccaacacaatggcttttgtgttagtccagcctgtactactataac 172

                                                                       
Query: 241 aaaatgcctgggactagctagtgtataaagagatttatttctgaaaattctgtacattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 171 aaaatgcctgggactagctagtgtataaagagatttatttctgaaaagtctgtacattaa 112

                                                                       
Query: 301 gaagcacctgcaagttcctttattttgtgaaggatgttctctgcttaaaaga-tggtact 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 111 gaagcacctgcaagttcctttattttgtgaaggatgttctctgcttaaaagattagtact 52

                                                              
Query: 360 tcttccagaagagatgatcattgtgtccttacatggtgaaaagctgaaagg 410
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  tcttccagaagagatgatcattgtgtccttacatggtgaaaagctgaaagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)