Query= MSMg01no503_h09.b1 MSMg01no503_h09.b1 CHROMAT_FILE:
MSMg01no503_h09.b1 PHD_FILE: MSMg01no503_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:44 2005
(549 letters)
>mm_chr4_53810201_53811149
Length = 949
Score = 963 bits (498), Expect = 0.0
Identities = 537/550 (97%), Gaps = 2/550 (0%)
Strand = Plus / Minus
Query: 1 gagctacccagagaagctctatctcaacatccacccccacccccaaaagaaaagaaaaat 60
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 749 gagctacccagagaagctctatctcaacatctacccccactcccaaaagaaaagaaaaat 690
Query: 61 caccccagaaggatctagaagatgagttgcagagcgggcttcacaggggcagacacgaga 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 689 caccccagaaggatctagaagatgagtcgcagagcgggcttcacaggggcagacacgaga 630
Query: 121 gaggaagtgtatcattctgtagacgtgttttctagtttctgtacctaaaata-tttttcc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 629 gaggaagtgtatcattctgtagacgtgttttctagtttctgtacctaaaatattttttcc 570
Query: 180 ccagccagctgaaattctgaagtacaatgataagtaagtctcagacaacttcatacatcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ccagccagctgaaattctgaagtacaatgataagtaagtctcagacaacttcatacatcc 510
Query: 240 cagagcatcgtccttcctacagcccagcatcatccttcgtgggcagcttgtagaattcca 299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cagagcatcgtccttccta-agcccagcatcatccttcgtgggcagcttgtagaattcca 451
Query: 300 tctttgctttcggtctatcagttaggggttgattaaccacggaggtaactgagcaaatgg 359
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 450 tctttgctttcggcctatcagttaggggttgattaaccacgggggtaactgagcaaatgg 391
Query: 360 ggagaagggcttaccacacaccaggagaaacagtaccttccctctggccctgtctgtgcc 419
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 390 ggagaagggcttaccatacaccaggagaaacagtaccttccctctggccctatctgtgcc 331
Query: 420 tactgtatgccatgctctgacgctagcactgcggagcctggacactctaaactgtgggct 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgctgtatgccatgctctgacgctagcactgcggagcctggacactctaaactgtgggct 271
Query: 480 tcccagaggggcggctttgtgaggctgaacacaggatcgacatttctctccgtactctca 539
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 270 tcccagaggggcggctttgtgaagctgaacacaggatcgacatttctctccatactctca 211
Query: 540 tgggttaggt 549
|||||||||
Sbjct: 210 ggggttaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_h09.g1 MSMg01no503_h09.g1 CHROMAT_FILE:
MSMg01no503_h09.g1 PHD_FILE: MSMg01no503_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:44 2005
(506 letters)
>mm_chr4_53663496_53664401
Length = 906
Score = 940 bits (486), Expect = 0.0
Identities = 501/506 (99%)
Strand = Plus / Plus
Query: 1 aaaccttgaactcttccagtgaaaagaactggccagaacaattccaagtcagtatataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaccttgaactcttccagtgaaaagaactggccagaacaattccaagtcagtatataat 260
Query: 61 tatccagttccttcaatcagttgtcagattaaaaggaaaagagtgatttcctacccatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatccagttccttcaatcagttgtcagattaaaaggaaaagagtgatttcctacccatga 320
Query: 121 gtactctcaatggaatgatagctccagggtactgtgaaaggggaacaatgtcttctgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtactctcaatggaatgatagctccagggtactgtgaaaggggaacaatgtcttctgcat 380
Query: 181 ttgatagcagatgaaaagagaaaatggggcttatttcctttttctcactcacaatagctt 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatagcaggtgaaaagagaaaatggggcttatttcctttttctcactcacaatagctt 440
Query: 241 gcccctggaatactgctcagggtgtgacagtgtcttgagcattgagaagagcaaatgaga 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 gcccctggaatactgctcagggtgcgacagtgtcttgagcattgagaagagcaaatgaga 500
Query: 301 cagggagctcagtcaataccctgcatactgaggttgggagaaagtccttctttaggctgg 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 cagggagctcagtcaataccctgcagactgaggttgggagaaagtccttctttaggctgg 560
Query: 361 tcaggaataccggggactttaacagaagcaaactttacttctgacaactacaaataaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaggaataccggggactttaacagaagcaaactttacttctgacaactacaaataaatg 620
Query: 421 aagtactcactaaccataccttacagtagacctgtaccttttatttgtgagcgttggtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 aagtactcactaaccataccttacagtagacctgtaccttttatttgtgagtgttggtgt 680
Query: 481 ctcacagaaatatagtctcttactgt 506
||||||||||| ||||||||||||||
Sbjct: 681 ctcacagaaatgtagtctcttactgt 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
