BAC Information

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BAC

Clone NameMSMg01-503N01
Chromosome4 (Build37)
Map Location 117,261,623 - 117,435,767
singlet/doubletdoublet
Overlap genePrnpip1, Dmap1, LOC433749, Klf17
Upstream geneGpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093
Downstream genePpia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503N01.T7 (MSMg01no503_n01.b1)MSMg01-503N01.TJ (MSMg01no503_n01.g1)
ACCAG578842AG578843
length704712
length of high quality
(start - end)		651 (54 - 704)625 (86 - 710)
definitionCHROMAT_FILE: MSMg01no503_n01.b1 PHD_FILE: MSMg01no503_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:12 2005CHROMAT_FILE: MSMg01no503_n01.g1 PHD_FILE: MSMg01no503_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,261,623 - 117,262,266)(117,435,143 - 117,435,767)
sequence
TTTTTTTCCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCA
GAGGATCCGCGGAATTCAGTGGATTTAATGGGCTGCTCTTCCCTTGGGCC
TTGGTTGTCTACCCAAAGGCTGGTTTTTCTTTCTTTACAGCTCACCGGGA
TCATTCAAGCCATGGTGGATGGCCAGCCAAGCCTGCAGCAAGTGCTGGAG
GTAGGTTGAATGACCTTTAATTCCTGACCTCTGACCTCTTCCTGCTGCCT
TTCTTTCCCTCCCCTCCTGAGAACGTTGCCGTATAATTTGACTATGATTA
TAGCTTGATTAGAATAACATTTGCTGTCACATCAGTGACATGCTGTTGAG
AGTATTGAACCATTGATCTGTCATCTCCAGCTGTTCCTGTCAGGGTTACT
GACAAGATGTCCAAGTGCTGCCAGGAGTCAGGCAGAGCCCCTTCACCCCT
CCTCACCTGGCCTGTGGCCTGTGCTGGGTGGGCTGGGGCAGAGGAGCTGC
TCTGCAGCCTTACAGGGTTAGCCCCTGGGACTCGAGGTGTTTTTGTTTAG
CTTTGGTGTTGGCTTCCTGTGGCATGTGAGCACTTCATTAACTCACCCAG
AACTCCCCATCGATGGCTTTTGTTTGCTGTCTGCTCCTCCAGGAGCTGCA
GTCAGCCGCCTGCCCCACTGCTGCTTGCCGCTGGATGCAATGTGCCTGTC
GGGT

CCCTTTTCTTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCCTTTGTAGAC
CAGGCTGGCCTCACAACTATCTGCCTGCCTCTGTCTCTTGAACAATGAGA
TTAAGGGTGTGCACAACCATGCCCAGCAAGTAATACACTTTTGATTGTGC
TTCTTCACTTCAGCCTCTAGAGACCCATAGGCAGGAGGCAGAGGCAGGTG
GATATCTGAGTTCAAGGCCAGCGTGGTAGAGATTCAGAACAGCCAGGGCT
ACACAGAGGAACCTTATCTTGAAAAACAATGTTTGCAGGGCAGGTAAAGA
GCAATGACTTTGCCACTTTGTTAATCTGGGGGTGAATTTCTGTCTTTATA
GCTGGCTTTGCTATGGGACTTTAGATGGGATTTTTGCTTTGTTCTTTGAG
ACAGGCTCCCACCTTGCAACTCTGTTTATACCATGGAGCCCAGGTTAAGA
GTAAACTGACTTCAGGCACGTACTGCTTCACCTTGATCAAATATAGGGCT
TTTCTTCCTGTTGGTCTCTTTTAACCCAGGGTTCTCTTTGTGGCATGCCT
AAGTTGTCCTAGAACTCACTTTGTAGACCAAGCTGGTCTATCAAACACAG
ATCCGAGTCTGGATATGGCCCTCTCAGAGCTCANGAGCCCCAGATACACC
TTATTAAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_n01.b1 MSMg01no503_n01.b1 CHROMAT_FILE:
MSMg01no503_n01.b1 PHD_FILE: MSMg01no503_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:12 2005
         (651 letters)



>mm_chr4_117261416_117262466
          Length = 1051

 Score = 1222 bits (632), Expect = 0.0
 Identities = 641/644 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggaattcagtggatttaatgggctgctcttcccttgggccttggttgtctacccaaaggc 67
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattcagtggacagaatgggctgctcttcccttgggccttggttgtctacccaaaggc 267

                                                                       
Query: 68  tggtttttctttctttacagctcaccgggatcattcaagccatggtggatggccagccaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tggtttttctttctttacagctcaccgggatcattcaagccatggtggatggccagccaa 327

                                                                       
Query: 128 gcctgcagcaagtgctggaggtaggttgaatgacctttaattcctgacctctgacctctt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcctgcagcaagtgctggaggtaggttgaatgacctttaattcctgacctctgacctctt 387

                                                                       
Query: 188 cctgctgcctttctttccctcccctcctgagaacgttgccgtataatttgactatgatta 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctgctgcctttctttccctcccctcctgagaacgttgccgtataatttgactatgatta 447

                                                                       
Query: 248 tagcttgattagaataacatttgctgtcacatcagtgacatgctgttgagagtattgaac 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tagcttgattagaataacatttgctgtcacatcagtgacatgctgttgagagtattgaac 507

                                                                       
Query: 308 cattgatctgtcatctccagctgttcctgtcagggttactgacaagatgtccaagtgctg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cattgatctgtcatctccagctgttcctgtcagggttactgacaagatgtccaagtgctg 567

                                                                       
Query: 368 ccaggagtcaggcagagccccttcacccctcctcacctggcctgtggcctgtgctgggtg 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ccaggagtcaggcagagccccttcacccctcctcacctggcctgtggcctgtgctgggtg 627

                                                                       
Query: 428 ggctggggcagaggagctgctctgcagccttacagggttagcccctgggactcgaggtgt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggctggggcagaggagctgctctgcagccttacagggttagcccctgggactcgaggtgt 687

                                                                       
Query: 488 ttttgtttagctttggtgttggcttcctgtggcatgtgagcacttcattaactcacccag 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttttgtttagctttggtgttggcttcctgtggcatgtgagcacttcattaactcacccag 747

                                                                       
Query: 548 aactccccatcgatggcttttgtttgctgtctgctcctccaggagctgcagtcagccgcc 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aactccccatcgatggcttttgtttgctgtctgctcctccaggagctgcagtcagccgcc 807

                                                       
Query: 608 tgccccactgctgcttgccgctggatgcaatgtgcctgtcgggt 651
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tgccccactgctgcttgccgctggatgcaatgtgcctgtcgggt 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no503_n01.g1 MSMg01no503_n01.g1 CHROMAT_FILE:
MSMg01no503_n01.g1 PHD_FILE: MSMg01no503_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:12 2005
         (625 letters)



>mm_chr4_117434846_117435870
          Length = 1025

 Score = 1195 bits (618), Expect = 0.0
 Identities = 623/625 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttcctttgtagaccaggctggcctcacaactatctgcctgcctctgtctcttgaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 acttcctttgtagaccaggctggcctcacaactatctgcctgcctctgtctcttgaacaa 863

                                                                       
Query: 61  tgagattaagggtgtgcacaaccatgcccagcaagtaatacacttttgattgtgcttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tgagattaagggtgtgcacaaccatgcccagcaagtaatacacttttgattgtgcttctt 803

                                                                       
Query: 121 cacttcagcctctagagacccataggcaggaggcagaggcaggtggatatctgagttcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cacttcagcctctagagacccataggcaggaggcagaggcaggtggatatctgagttcaa 743

                                                                       
Query: 181 ggccagcgtggtagagattcagaacagccagggctacacagaggaaccttatcttgaaaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 742 ggccagcgtggtagagattcagaacagccagggctacacagaggaaccttgtcttgaaaa 683

                                                                       
Query: 241 acaatgtttgcagggcaggtaaagagcaatgactttgccactttgttaatctgggggtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acaatgtttgcagggcaggtaaagagcaatgactttgccactttgttaatctgggggtga 623

                                                                       
Query: 301 atttctgtctttatagctggctttgctatgggactttagatgggatttttgctttgttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atttctgtctttatagctggctttgctatgggactttagatgggatttttgctttgttct 563

                                                                       
Query: 361 ttgagacaggctcccaccttgcaactctgtttataccatggagcccaggttaagagtaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttgagacaggctcccaccttgcaactctgtttataccatggagcccaggttaagagtaaa 503

                                                                       
Query: 421 ctgacttcaggcacgtactgcttcaccttgatcaaatatagggcttttcttcctgttggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctgacttcaggcacgtactgcttcaccttgatcaaatatagggcttttcttcctgttggt 443

                                                                       
Query: 481 ctcttttaacccagggttctctttgtggcatgcctaagttgtcctagaactcactttgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctcttttaacccagggttctctttgtggcatgcctaagttgtcctagaactcactttgta 383

                                                                       
Query: 541 gaccaagctggtctatcaaacacagatccgagtctggatatggccctctcagagctcang 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 382 gaccaagctggtctatcaaacacagatccgagtctggatatggccctctcagagctcagg 323

                                    
Query: 601 agccccagatacaccttattaaaat 625
           |||||||||||||||||||||||||
Sbjct: 322 agccccagatacaccttattaaaat 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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